View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3802_high_2 (Length: 359)
Name: NF3802_high_2
Description: NF3802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3802_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 7523105 - 7522774
Alignment:
| Q |
13 |
aatatttaagggagaatattatcggataattcttcttattctacaactatagatgtttctgatatccgtcaaatgataataaatattcaaaattcaaatt |
112 |
Q |
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| T |
7523105 |
aatatttaagggagaatattatgggataattcttcttattctgcaactatagatgtttctgatatccgtcaaatgataataaatattcaaaattcaaatt |
7523006 |
T |
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| Q |
113 |
atctttgaagtttttatctttttcacattacttgttgttccgatatcattattcattgtattgtggagcaaccagtgtttcaatgcttgttatgcaattg |
212 |
Q |
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| T |
7523005 |
atctttgaagtgtttatctttttcacattacttgttgttccgatatcattattcattgtattgtggagcaaccagtgtttcaatgcttgttatgcaattg |
7522906 |
T |
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| Q |
213 |
tattgatggataacaagtaacaagtaatgcgaaaaagataaacacttgaaaaaccatttgattgttgaatatttggtatcatttgacggaacatctatag |
312 |
Q |
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| T |
7522905 |
tattgatggataacaagtaacaagtaatgcgaaaaagataaacacttgaaaaatcagttgattgttgaatatttggtatcattcgaaggaacatctatag |
7522806 |
T |
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| Q |
313 |
ttgcataagaagaagaattgtcccataaaact |
344 |
Q |
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| T |
7522805 |
ttgcataataagaagaattgtcccataaaact |
7522774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 340
Target Start/End: Original strand, 7522970 - 7523087
Alignment:
| Q |
231 |
aacaagtaatgcgaaaaagataaacacttgaaaaaccatttgattgttgaatatttggtatcatttgacgg--------aacatctatagttgcataaga |
322 |
Q |
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| T |
7522970 |
aacaagtaatgtgaaaaagataaacacttcaaagataatttgaattttgaatatttattatcatttgacggatatcagaaacatctatagttgcagaata |
7523069 |
T |
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| Q |
323 |
agaagaattgtcccataa |
340 |
Q |
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| T |
7523070 |
agaagaattatcccataa |
7523087 |
T |
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