View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3802_low_2 (Length: 493)
Name: NF3802_low_2
Description: NF3802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3802_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 44960982 - 44960506
Alignment:
| Q |
1 |
ccaccaccaacaccaacaacaacaaagacaaaattttccatttcaacttcttgagaagaaagaagataaccaagaagcagcatcatgttcaacttcttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44960982 |
ccaccaccaacaccaacaacaacaaagacaaaattttccatttcaacttcttgagaagaaagaagataaccaagaagcagcatcatgttcaacttcttct |
44960883 |
T |
|
| Q |
101 |
ccatatccatccctagcaatctcaccaacagaaccaagtacatcaaattcaaaccgatccaaccaactagtcccagcatcaacaccaacaacctctgacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44960882 |
ccatatccatccctagcaatctcaccaacagaaccaagtacatcaaattcaaaccgatccaaccaactagtcccagcatcaacaccaacaacctctgacc |
44960783 |
T |
|
| Q |
201 |
ctgccaacaaaaaacctcctccgaaaagaacttccaccaaagaccgtcataccaaagtagaaggccgtggccgccgcatccgaatgccggcactttgtgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44960782 |
ctgccaacaaaaaacctcctccgaaaagaacttccaccaaagaccgtcataccaaagtagaaggccgtggccgccgcatccgaatgccggcactttgtgc |
44960683 |
T |
|
| Q |
301 |
tgctagagtttttcagcttacacgcgaacttggccataaatctgatggtgaaaccattgaatggcttcttcaacaagctgaacctgctgttatagccgcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44960682 |
tgctagagtttttcagcttacacgcgaacttggccataaatctgatggtgaaaccattgaatggcttcttcaacaagctgaaccagctgttatagccgcc |
44960583 |
T |
|
| Q |
401 |
actggtactggaactatacctgctaacttcacatctctcaatatctcacttcgtagctcaggctcatccatgtctgt |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44960582 |
actggtactggaactatacctgctaacttcacatctctcaatatctcacttcgtagctcaggctcatccatgtctgt |
44960506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 476
Target Start/End: Complemental strand, 17429364 - 17429097
Alignment:
| Q |
209 |
aaaaaacctcctccgaaaagaacttccaccaaagaccgtcataccaaagtagaaggccgtggccgccgcatccgaatgccggcactttgtgctgctagag |
308 |
Q |
| |
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||||| ||||| ||||| || |||| || |||||||| || || || ||||| || || |||||||| ||||| |||||||| ||||||||||||| |
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| T |
17429364 |
aaaaagcctccgccgaagcgagcttcgacgaaagaccggcacacgaaggtagacggacgaggccgccggatccgtatgccggcggcctgtgctgctagag |
17429265 |
T |
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| Q |
309 |
tttttcagcttacacgcgaacttggccataaatctgatggtgaaaccattgaatggcttcttcaacaagctgaacctgctgttatagccgccactggtac |
408 |
Q |
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| T |
17429264 |
tgttccagctcacgcgtgagctgggacataaatcagacggcgagacgattgagtggctgcttcaacaggcagagccagccgtcatcgccgccaccggaac |
17429165 |
T |
|
| Q |
409 |
tggaactatacctgctaacttcacatctctcaatatctcacttcgtagctcaggctcatccatgtctg |
476 |
Q |
| |
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| T |
17429164 |
aggaacaattccggccaactttacttcacttaatatatctcttagaagctcaggctcaaccatgtctg |
17429097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 470306 - 470257
Alignment:
| Q |
332 |
ggccataaatctgatggtgaaaccattgaatggcttcttcaacaagctga |
381 |
Q |
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||||| ||||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
470306 |
ggccacaaatcagatggtgaaacaattgagtggcttcttcaacaagctga |
470257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 28042056 - 28042147
Alignment:
| Q |
233 |
tccaccaaagaccgtcataccaaagtagaaggccgtggccgccgcatccgaatgccggcactttgtgctgctagagtttttcagcttacacg |
324 |
Q |
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||||||||||||||||| |||||||| | |||||||||||||| |||| |||||| |||| || || |||||| | || ||||| ||||| |
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| T |
28042056 |
tccaccaaagaccgtcacaccaaagttaacggccgtggccgccgtgtccgtatgccgccactctgcgccgctagaatcttccagctcacacg |
28042147 |
T |
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