View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3802_low_6 (Length: 272)
Name: NF3802_low_6
Description: NF3802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3802_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 7688593 - 7688338
Alignment:
| Q |
23 |
gatagagaaggatggttggcaatgaaatgtttattgcttctaaatatctaattgttagnnnnnnnnnn------gagggataattgttagttatttacag |
116 |
Q |
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| T |
7688593 |
gatagagaaggatggttggcaatgaaatgtttattgcttctaaatatctaattgttagttttttttttttttttgagggataattgttagttatttacag |
7688494 |
T |
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| Q |
117 |
tgcttagtttagctacaaaatatttccttaggaatatatttgttaaatatttattataaggcttatctcaggttttgttaggtaatttttccatgtattt |
216 |
Q |
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| T |
7688493 |
tgcttagtttagctacaaaatatttccttaggaatatatttgttaaatatttattataaggcttatctcaggttttgttaggtaatttttccatgtattt |
7688394 |
T |
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| Q |
217 |
attaagtttaatggagatacattgtcattgtaaatcagttttacagtgacatctat |
272 |
Q |
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| T |
7688393 |
attaagtttaatggagatacattgtcattgtaaatcagttttacagtgacatctat |
7688338 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 19370667 - 19370707
Alignment:
| Q |
221 |
agtttaatggagatacattgtcattgtaaatcagttttaca |
261 |
Q |
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| T |
19370667 |
agtttaatggacatacattgtcaatgtaaattagttttaca |
19370707 |
T |
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