View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3802_low_7 (Length: 249)
Name: NF3802_low_7
Description: NF3802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3802_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 31036066 - 31035899
Alignment:
| Q |
60 |
tagaacattaatatactttaatgcaaatgctaggagaatttgatgattctttaacccaacaaatgctacca--tataggttaaggattcaacgacacaaa |
157 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
31036066 |
tagaacattaatatacttttatgcaaatgctaggagaatttgatgattctttaacccaaaaaatgctaccatatataggttaaggattcaacga-acaaa |
31035968 |
T |
|
| Q |
158 |
aaataaaaccttatgtgaatcatggtacaatgtaattgtacatgacaaaattggaaatgaatgttaaga |
226 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
31035967 |
aaataaaaccttatgtgaatcatgctacaatgtaattgtacatgacaaaaatgaaaatgaatgttaaga |
31035899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 42662282 - 42662181
Alignment:
| Q |
70 |
atatactttaatgcaaatgctaggagaatttgatgattctttaacccaacaaat-gcta--ccatataggttaaggattcaacgacacaaaaaataaaac |
166 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||| ||||| |||||| | ||| |||| |||||||| |||||||||||||||||||||| || |||| |
|
|
| T |
42662282 |
atattcttttatgcaaatgttaggagaatttgaaaattctctaaccccagaaaaagctataccatatagcttaaggattcaacgacacaaaatatcaaac |
42662183 |
T |
|
| Q |
167 |
ct |
168 |
Q |
| |
|
|| |
|
|
| T |
42662182 |
ct |
42662181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 55641923 - 55641822
Alignment:
| Q |
70 |
atatactttaatgcaaatgctaggagaatttgatgattctttaacccaacaaat-gcta--ccatataggttaaggattcaacgacacaaaaaataaaac |
166 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||| ||||| |||||| | ||| |||| |||||||| |||||||||||||||||||||| || |||| |
|
|
| T |
55641923 |
atatgcttttatgcaaatgttaggagaatttgaaaattctctaaccccagaaaaagctataccatatagcttaaggattcaacgacacaaaatatcaaac |
55641824 |
T |
|
| Q |
167 |
ct |
168 |
Q |
| |
|
|| |
|
|
| T |
55641823 |
ct |
55641822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University