View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3802_low_9 (Length: 230)

Name: NF3802_low_9
Description: NF3802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3802_low_9
NF3802_low_9
[»] chr5 (10 HSPs)
chr5 (7-109)||(43147253-43147355)
chr5 (10-106)||(2786884-2786980)
chr5 (7-110)||(40033811-40033917)
chr5 (20-98)||(8688264-8688342)
chr5 (20-106)||(7662031-7662117)
chr5 (20-106)||(34954200-34954286)
chr5 (20-106)||(12144220-12144306)
chr5 (24-106)||(18171967-18172049)
chr5 (49-106)||(1081744-1081801)
chr5 (162-230)||(43147912-43147980)
[»] chr1 (13 HSPs)
chr1 (7-111)||(30858669-30858775)
chr1 (20-106)||(43138476-43138562)
chr1 (20-107)||(15399243-15399330)
chr1 (20-106)||(7014601-7014687)
chr1 (20-106)||(10308646-10308732)
chr1 (20-106)||(33686371-33686457)
chr1 (22-107)||(49150695-49150780)
chr1 (7-114)||(22605606-22605716)
chr1 (20-103)||(12927004-12927087)
chr1 (7-111)||(1671136-1671243)
chr1 (38-107)||(45053322-45053391)
chr1 (24-93)||(20447362-20447431)
chr1 (24-93)||(20533125-20533194)
[»] chr2 (16 HSPs)
chr2 (7-106)||(21083941-21084040)
chr2 (20-106)||(6728792-6728878)
chr2 (20-106)||(41192210-41192296)
chr2 (20-107)||(5290526-5290613)
chr2 (20-106)||(1888092-1888178)
chr2 (20-106)||(40642618-40642704)
chr2 (7-114)||(2194977-2195087)
chr2 (20-107)||(26257602-26257689)
chr2 (20-106)||(35151356-35151442)
chr2 (23-98)||(32737702-32737777)
chr2 (20-107)||(37057385-37057472)
chr2 (20-106)||(5814362-5814448)
chr2 (20-106)||(34619728-34619814)
chr2 (20-107)||(4616471-4616558)
chr2 (7-95)||(6903519-6903611)
chr2 (20-93)||(37891916-37891989)
[»] chr8 (9 HSPs)
chr8 (21-107)||(1217964-1218050)
chr8 (20-107)||(5912943-5913030)
chr8 (20-107)||(9039838-9039925)
chr8 (20-106)||(4322870-4322956)
chr8 (7-111)||(2766661-2766767)
chr8 (20-107)||(42182836-42182923)
chr8 (20-106)||(35161779-35161865)
chr8 (18-106)||(15739531-15739620)
chr8 (20-107)||(4759032-4759119)
[»] chr7 (10 HSPs)
chr7 (20-98)||(40144610-40144688)
chr7 (20-111)||(33803090-33803181)
chr7 (20-107)||(14678477-14678563)
chr7 (20-106)||(37450175-37450260)
chr7 (20-106)||(3742196-3742283)
chr7 (20-95)||(30362553-30362628)
chr7 (33-98)||(4034992-4035057)
chr7 (55-107)||(39284162-39284214)
chr7 (20-62)||(8261117-8261159)
chr7 (57-95)||(8261074-8261112)
[»] chr4 (15 HSPs)
chr4 (20-106)||(54703810-54703896)
chr4 (20-107)||(42119148-42119234)
chr4 (20-106)||(36046733-36046819)
chr4 (20-106)||(54808831-54808917)
chr4 (7-95)||(9242716-9242807)
chr4 (7-107)||(779261-779365)
chr4 (49-111)||(37694366-37694428)
chr4 (30-107)||(33985286-33985363)
chr4 (20-107)||(47020237-47020324)
chr4 (20-106)||(52032525-52032611)
chr4 (30-106)||(51242984-51243061)
chr4 (20-107)||(34939186-34939273)
chr4 (49-107)||(45042865-45042923)
chr4 (50-106)||(52789569-52789625)
chr4 (34-92)||(43502165-43502223)
[»] chr3 (8 HSPs)
chr3 (20-106)||(49501359-49501445)
chr3 (20-106)||(49741926-49742012)
chr3 (10-106)||(41650120-41650219)
chr3 (20-107)||(49303381-49303468)
chr3 (7-95)||(47067940-47068028)
chr3 (20-106)||(2447768-2447853)
chr3 (20-105)||(23029811-23029896)
chr3 (7-62)||(8628656-8628714)
[»] chr6 (4 HSPs)
chr6 (7-95)||(2419601-2419692)
chr6 (20-107)||(3514509-3514596)
chr6 (44-106)||(30633966-30634028)
chr6 (37-98)||(11599195-11599256)
[»] scaffold0753 (1 HSPs)
scaffold0753 (7-92)||(4205-4293)
[»] scaffold0051 (1 HSPs)
scaffold0051 (20-106)||(20267-20353)
[»] scaffold0217 (1 HSPs)
scaffold0217 (7-95)||(25793-25884)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 43147253 - 43147355
Alignment:
Q  7 tatagaagcaaaaaagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  43147253 tatagaagcaaaaaagaagagaaagagggggagagattgggaggagataatgtgaggaaaagaggaagtatgtgagggtttttataagtgatttaaggta 43147352  T
Q  107 gca 109  Q
    |||    
T  43147353 gca 43147355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 2786980 - 2786884
Alignment:
Q  10 agaagcaaaaaagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||| ||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2786980 agaagtaaagaagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 2786884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 40033811 - 40033917
Alignment:
Q  7 tatagaagcaaaaaaga---agagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaag 103  Q
    |||||||||||||||||   |||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  40033811 tatagaagcaaaaaagaagaagagaaagagggggggagagtgggaggagataatgtgaggaaaagatgaagtatgtgatggtatttataggtggtttaag 40033910  T
Q  104 gtagcat 110  Q
    |||||||    
T  40033911 gtagcat 40033917  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 8688342 - 8688264
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggt 98  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8688342 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggt 8688264  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 7662031 - 7662117
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  7662031 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagagggagtatgtgagggtttttatagatggtataaggta 7662117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 34954286 - 34954200
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  34954286 aagaagagaaagagggggagagagtgggaggagaaaatgtgagaaaaagaggaagtatgtgagggtttttataggtgatataaggta 34954200  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 12144306 - 12144220
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||| ||| |||| ||||| |||||||| |||||| |||||||||||||||||| ||||||||| |||||||    
T  12144306 aagaagagaaagagggggacagagtgggaggagaaaatgtgagaaaaagatgaagtatgtgagggttttcataggtggtataaggta 12144220  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 18171967 - 18172049
Alignment:
Q  24 agagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||| |||||||| |||| |||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||    
T  18171967 agagagagagggggggagagtgggaggagaaaatgtgaggaaaagagaaagtatgtgtgggtttttataggtggtataaggta 18172049  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 1081744 - 1081801
Alignment:
Q  49 ggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  1081744 ggagaaaatgtgaggaaaagaggaagtatgtgagggcttttataggtggtataaggta 1081801  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 43147912 - 43147980
Alignment:
Q  162 tccaaaaacaaacaacaactacaatgaagnnnnnnnnnngacaaacaactacaatgaagtgtgcacaaa 230  Q
    ||||||||||||||||||||||||| |||          ||||||||||||||||||||||||||||||    
T  43147912 tccaaaaacaaacaacaactacaataaagttttttttttgacaaacaactacaatgaagtgtgcacaaa 43147980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 30858775 - 30858669
Alignment:
Q  7 tatagaagcaaaaa--agaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaagg 104  Q
    ||||||||||||||  |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  30858775 tatagaagcaaaaagaagaagagaaagagggggagagagtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttataggtggtttaagg 30858676  T
Q  105 tagcata 111  Q
    |||||||    
T  30858675 tagcata 30858669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 43138476 - 43138562
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43138476 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 43138562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 15399330 - 15399243
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  15399330 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatatgagggtttttataggtggtataaggtag 15399243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 7014601 - 7014687
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  7014601 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagtgtttttataggtggtataaggta 7014687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 10308732 - 10308646
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  10308732 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataaggta 10308646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 33686371 - 33686457
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  33686371 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgcgagggtttttataggtggtataaggta 33686457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 49150780 - 49150695
Alignment:
Q  22 gaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49150780 gaagagaaagagggggagaaagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtag 49150695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 22605716 - 22605606
Alignment:
Q  7 tatagaagcaaaaaagaaga---gaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaag 103  Q
    ||||||||||||||||||||   |||||||||||||||| |||| |||||||||||||||||||||| || ||||| || || |||||| ||||||||||    
T  22605716 tatagaagcaaaaaagaagaagagaaagagggggagagagtgggaggagataatgtgaggaaaagagaaactatgtaagagtatttatacgtggtttaag 22605617  T
Q  104 gtagcataaca 114  Q
    |||||||||||    
T  22605616 gtagcataaca 22605606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 12927087 - 12927004
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaag 103  Q
    ||||||||||||||||||| ||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12927087 aagaagagaaagagggggaaagagtaggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataag 12927004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 1671136 - 1671243
Alignment:
Q  7 tatagaagcaaaaaa---gaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaag 103  Q
    |||||||||||||||   |||||||||||||||||| || |||   ||||||||||||| |||||||||||| ||| |||||  || |||||||||||||    
T  1671136 tatagaagcaaaaaataagaagagaaagagggggagtgagtggaatgagataatgtgagaaaaagaggaagtttgtaagggtacttgtaggtggtttaag 1671235  T
Q  104 gtagcata 111  Q
     |||||||    
T  1671236 ttagcata 1671243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 45053322 - 45053391
Alignment:
Q  38 agagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  45053322 agagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataatgtag 45053391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 20447431 - 20447362
Alignment:
Q  24 agagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttatag 93  Q
    |||||||||||||||| || | || ||||||||||||| ||||||||||||| ||||||||| |||||||    
T  20447431 agagaaagagggggagcgagtcggaggagataatgtgacgaaaagaggaagtttgtgagggtatttatag 20447362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 20533194 - 20533125
Alignment:
Q  24 agagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttatag 93  Q
    |||||||||||||||| || | || ||||||||||||| ||||||||||||| ||||||||| |||||||    
T  20533194 agagaaagagggggagcgagtcggaggagataatgtgacgaaaagaggaagtttgtgagggtatttatag 20533125  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 21084040 - 21083941
Alignment:
Q  7 tatagaagcaaaaaagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||| |||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21084040 tatagaaacaaagaagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 21083941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 6728878 - 6728792
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6728878 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 6728792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 41192210 - 41192296
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41192210 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 41192296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 5290526 - 5290613
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5290526 aagaagagaaagagggggagagagttggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtag 5290613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 1888178 - 1888092
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1888178 aagaagagaaagagggggagagagtgggatgagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 1888092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 40642704 - 40642618
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40642704 aagaagagaaagagggggagagagtgggatgagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 40642618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 2194977 - 2195087
Alignment:
Q  7 tatagaagcaaaaaaga---agagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaag 103  Q
    |||||||||||||||||   |||||||||| |||||||| |||| |||||||||||| ||||||||| ||||||||||| || ||||||||||||||||     
T  2194977 tatagaagcaaaaaagaagaagagaaagagagggagagagtgggaggagataatgtgcggaaaagagaaagtatgtgagagtatttataggtggtttaaa 2195076  T
Q  104 gtagcataaca 114  Q
    |||||||||||    
T  2195077 gtagcataaca 2195087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 26257602 - 26257689
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    |||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  26257602 aagaagagaaagcgggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaagtag 26257689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 35151356 - 35151442
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    |||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  35151356 aagaagagaaagagggggcgagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtgttataaggta 35151442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 32737702 - 32737777
Alignment:
Q  23 aagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggt 98  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  32737702 aagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagagaaagtatgtgagggtttttataggtggt 32737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 37057472 - 37057385
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||||| ||||||||||| |||||||| ||||||||    
T  37057472 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagagaaagtatttgagggtttttgtaggtggtataaggtag 37057385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 5814362 - 5814448
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||  |||||||||||||| |||||||    
T  5814362 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggatgtatgtgagaatttttataggtggtataaggta 5814448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 34619728 - 34619814
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||| || |||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  34619728 aagaagaaaaggagggggagagagtgggaggagaaaatgtgaggaaaagagaaagtatgtgagggtttttataggtggtataaggta 34619814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 4616471 - 4616558
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| | || ||||| ||||| |||||||||||||||||||||| |||||| |||||||| ||||||||    
T  4616471 aagaagagaaagagggggagagagttggaggagaaaatgtaaggaaaagaggaagtatgtgagagtttttctaggtggtataaggtag 4616558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 6903519 - 6903611
Alignment:
Q  7 tatagaagcaaaaaagaaga---gaaagagggggagagattgggt-ggagataatgtgaggaaaagaggaagtatgtgagggtttttataggt 95  Q
    ||||||||||||||||||||   |||||||||||||||| ||||  ||||||||||||||||||||||| ||| |||||| || |||||||||    
T  6903519 tatagaagcaaaaaagaagaagagaaagagggggagagagtgggaaggagataatgtgaggaaaagagggagtttgtgagagtatttataggt 6903611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 37891989 - 37891916
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttatag 93  Q
    |||||||| ||||||||| |||| |||| ||||||||||||||||| | ||||||||||||||||| |||||||    
T  37891989 aagaagagtaagagggggggagagtgggaggagataatgtgaggaatataggaagtatgtgagggtatttatag 37891916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 1218050 - 1217964
Alignment:
Q  21 agaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1218050 agaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtag 1217964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 5912943 - 5913030
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5912943 aagaagagaaagagggggagagagtggaaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtag 5913030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 9039925 - 9039838
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9039925 aagaagagaaaaagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtag 9039838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 4322956 - 4322870
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||  |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  4322956 aagaagagaaagagggggagagtgtgggaggagaaaatgtgaggaaaagaggaggtatgtgagggtttttataggtggtataaggta 4322870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 2766661 - 2766767
Alignment:
Q  7 tatagaagcaaaaa---agaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaag 103  Q
    ||||||||||||||   ||||||||||||||||||| || |||| ||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||    
T  2766661 tatagaagcaaaaacgaagaagagaaagagggggagcgagtgggaggagataatatgaggaaa-gaggaagtttgtgagggtatttataggtggtttaag 2766759  T
Q  104 gtagcata 111  Q
    ||||||||    
T  2766760 gtagcata 2766767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 42182923 - 42182836
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    |||||||||||||||||| |||| |||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  42182923 aagaagagaaagagggggggagagtgggaggagaaaatgtgaggaaaagaggaagcatgtgtgggtttttataggtggtataaggtag 42182836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 35161865 - 35161779
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||| ||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  35161865 aagaagagaaagatggggagagagtgggaggagaaaatgcgaggaaaagaggaagtatgggagggtttttataggtggtataaggta 35161779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 15739531 - 15739620
Alignment:
Q  18 aaaagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgaggg-tttttataggtggtttaaggta 106  Q
    ||||||||||||||| ||||||||| || | ||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  15739531 aaaagaagagaaagaaggggagagagtgagaggagaaaatgtgaggaaaagaggaagtatgtgagggttttttataggtggtataaggta 15739620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 4759032 - 4759119
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttatagg-tggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  4759032 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtga-ggtttttataggttggtataaggtag 4759119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 40144610 - 40144688
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggt 98  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40144610 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggt 40144688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 33803181 - 33803090
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtagcata 111  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||    
T  33803181 aagaagagaaagagggggagagtgtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttatagatggtttaaggtaccata 33803090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 14678563 - 14678477
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  14678563 aagaagagaaagagggggagagagtgggaggagaaaatgtgaagaaa-gaggaagtatgtgagggtttttataggtggtataaggtag 14678477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 37450260 - 37450175
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| || | ||||| ||||||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  37450260 aagaagagaaagagggggagagagtgagaggagaaaatgtgaggaaaaaaggaagtatgtgaggg-ttttataggtggtataaggta 37450175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 3742196 - 3742283
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgaggg-tttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||   ||||| |||||||||||||| |||||||    
T  3742196 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtaaaggagggttttttataggtggtataaggta 3742283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 30362553 - 30362628
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggt 95  Q
    |||||||| |||||||||||||| || | ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  30362553 aagaagagtaagagggggagagagtgcgaggagataatgtgaggaatataggaagtatgtgagggtatttataggt 30362628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 4034992 - 4035057
Alignment:
Q  33 gggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggt 98  Q
    |||||||||| |||| ||||| ||||||||||||||| |||||||||||| |||||||||||||||    
T  4034992 gggggagagagtgggaggagaaaatgtgaggaaaagaagaagtatgtgagagtttttataggtggt 4035057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 39284214 - 39284162
Alignment:
Q  55 aatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  39284214 aatgtgaggaaaagaggaagtatgtgagggttttaataggtggtataaggtag 39284162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 8261159 - 8261117
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgag 62  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  8261159 aagaagagaaagagggggagagagtgggaggagataatgtgag 8261117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 8261112 - 8261074
Alignment:
Q  57 tgtgaggaaaagaggaagtatgtgagggtttttataggt 95  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  8261112 tgtgaggaaaagaggaagtttgtgagggtatttataggt 8261074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 54703896 - 54703810
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  54703896 aagaagagaaagagggggagagagtgggaggagagaatgtgaggaaaagaggaaatatgtgagggtttttataggtggtataaggta 54703810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 42119234 - 42119148
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  42119234 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtga-ggtttttataggtggtataaggtag 42119148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 36046733 - 36046819
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    |||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  36046733 aagaagagaaagagtgggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataaggta 36046819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 54808831 - 54808917
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  54808831 aagaagagaaagagggggagagagtggaaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttattggtggtataaggta 54808917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 9242716 - 9242807
Alignment:
Q  7 tatagaagcaaaaaaga---agagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggt 95  Q
    |||||||||||||||||   ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  9242716 tatagaagcaaaaaagaagaagagaaagagggggagagagtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttataggt 9242807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 779261 - 779365
Alignment:
Q  7 tatagaagcaaaaaagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaag----tatgtgagggtttttataggtggtttaa 102  Q
    ||||||| |||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    ||||||||||||||||||| |||| |||    
T  779261 tatagaaacaaagaagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatatatgtgagggtttttatagatggtataa 779360  T
Q  103 ggtag 107  Q
    |||||    
T  779361 ggtag 779365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 37694366 - 37694428
Alignment:
Q  49 ggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtagcata 111  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37694366 ggagataatgtgaggaaaagaggaagtatgttagggtttttataggtggtttaaggtagcata 37694428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 33985286 - 33985363
Alignment:
Q  30 agagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  33985286 agagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtgatataaggtag 33985363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 47020324 - 47020237
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||| ||||| |||||||| | ||||||||||||||||||||||||||| | ||| ||||||||    
T  47020324 aagaagagaaagagggggagagagtgggaggagaaaatgtgagaataagaggaagtatgtgagggtttttataagcggtataaggtag 47020237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 52032525 - 52032611
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    |||||||||||||| |||||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||  |||||| |||||||    
T  52032525 aagaagagaaagagagggagagagtgggaggagaaaatgtgaggaaaagaggaattatgtgagggtttttaccggtggtataaggta 52032611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 51243061 - 51242984
Alignment:
Q  30 agagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggt-ttaaggta 106  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  51243061 agagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtatttataggtggtattaaggta 51242984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 34939186 - 34939273
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||| | ||| |||||||||| ||||||| |||||| || ||||||||||||||| ||||||||    
T  34939186 aagaagagaaagagggggagagagtgggagaagaaaatgtgaggataagaggaggtatgtaagagtttttataggtggtataaggtag 34939273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 45042865 - 45042923
Alignment:
Q  49 ggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  45042865 ggagaaaatgtgaggaaaagaggaagtatgtgagcgtttttataggtggtataaggtag 45042923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 52789625 - 52789569
Alignment:
Q  50 gagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||    
T  52789625 gagaaaatatgaggaaaagaggaagtatgtgagggtttttataggtgttataaggta 52789569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 43502165 - 43502223
Alignment:
Q  34 ggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttata 92  Q
    ||||||||| |||| ||||| ||||||||||||| ||||||||||||||| ||||||||    
T  43502165 ggggagagagtgggaggagaaaatgtgaggaaaataggaagtatgtgaggatttttata 43502223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 49501359 - 49501445
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49501359 aagaagagaaagaggggtagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 49501445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 49741926 - 49742012
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  49741926 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataaggta 49742012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 41650219 - 41650120
Alignment:
Q  10 agaagcaaaaaagaaga---gaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    |||||||||||||||||   |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  41650219 agaagcaaaaaagaagaagcgaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataaggta 41650120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 49303468 - 49303381
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  49303468 aagaagagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtgtgtgaggatttttataggtggtgtaaggtag 49303381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 47067940 - 47068028
Alignment:
Q  7 tatagaagcaaaaaagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggt 95  Q
    |||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||| | ||||||||||||||||| |||||||||    
T  47067940 tatagaagcaaagaagaagagaaagagggggagagagtgggaggagatagtgtgaggaatataggaagtatgtgagggtatttataggt 47068028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 2447853 - 2447768
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  2447853 aagaagagaaagagggggagagagtgggaggagaaaatgtgagg-aaagaggaagtacgtgagggtttttataggtggtataaggta 2447768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 23029896 - 23029811
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggt 105  Q
    ||||||||||| ||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  23029896 aagaagagaaatagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtgtttataggtggtataaggt 23029811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 8628714 - 8628656
Alignment:
Q  7 tatagaagcaaaaaagaaga---gaaagagggggagagattgggtggagataatgtgag 62  Q
    ||||||||||||||||||||   |||||||||||||||| |||  ||||||| ||||||    
T  8628714 tatagaagcaaaaaagaagaagagaaagagggggagagagtggtaggagatagtgtgag 8628656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 2419601 - 2419692
Alignment:
Q  7 tatagaagcaaaaaaga---agagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggt 95  Q
    |||||||||||||||||   ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  2419601 tatagaagcaaaaaagaagaagagaaagagggggagagagtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttataggt 2419692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 3514509 - 3514596
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggtag 107  Q
    ||||||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  3514509 aagaagagaaagacggggagagagtgggaggagaaaatgtcaggaaaagaggaagtatgtgcgggtttttataggtggtataaggtag 3514596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 30633966 - 30634028
Alignment:
Q  44 tgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  30633966 tgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttatagatggtataaggta 30634028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 11599256 - 11599195
Alignment:
Q  37 gagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggt 98  Q
    |||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11599256 gagagagtgggatgagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggt 11599195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 4293 - 4205
Alignment:
Q  7 tatagaagcaaaaaagaaga---gaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttata 92  Q
    ||||||||||||||||||||   |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||    
T  4293 tatagaagcaaaaaagaagaagagaaagagggggagagagtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttata 4205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 20353 - 20267
Alignment:
Q  20 aagaagagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggtggtttaaggta 106  Q
    ||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||    
T  20353 aagaagagaaagaggggaagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggttgtataaggta 20267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 25884 - 25793
Alignment:
Q  7 tatagaagcaaaaaagaa---gagaaagagggggagagattgggtggagataatgtgaggaaaagaggaagtatgtgagggtttttataggt 95  Q
    ||||||||||||||||||   |||||||||||||||||| |||| ||||||||| ||||||||||||||| | ||||||||| |||||||||    
T  25884 tatagaagcaaaaaagaataagagaaagagggggagagagtgggaggagataatatgaggaaaagaggaaatttgtgagggtatttataggt 25793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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