View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3803_high_15 (Length: 254)

Name: NF3803_high_15
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3803_high_15
NF3803_high_15
[»] chr6 (3 HSPs)
chr6 (1-214)||(28138277-28138490)
chr6 (124-195)||(6982835-6982906)
chr6 (130-193)||(10501975-10502038)
[»] chr5 (3 HSPs)
chr5 (124-211)||(33417416-33417503)
chr5 (120-189)||(31610042-31610111)
chr5 (175-214)||(15867381-15867420)
[»] chr8 (3 HSPs)
chr8 (124-214)||(6596498-6596588)
chr8 (126-195)||(19168178-19168247)
chr8 (129-214)||(40715928-40716013)
[»] chr7 (5 HSPs)
chr7 (124-214)||(8308208-8308298)
chr7 (129-214)||(38836121-38836206)
chr7 (124-195)||(49094543-49094614)
chr7 (123-195)||(30559359-30559431)
chr7 (130-193)||(25862613-25862676)
[»] chr2 (7 HSPs)
chr2 (124-189)||(21949895-21949960)
chr2 (120-173)||(41411516-41411569)
chr2 (126-173)||(40275158-40275205)
chr2 (120-189)||(9446973-9447042)
chr2 (122-195)||(14555887-14555960)
chr2 (138-214)||(18559723-18559799)
chr2 (123-195)||(38346691-38346763)
[»] chr4 (3 HSPs)
chr4 (120-194)||(39735815-39735889)
chr4 (129-214)||(2048966-2049051)
chr4 (126-195)||(3958945-3959014)
[»] chr1 (2 HSPs)
chr1 (120-193)||(42080685-42080758)
chr1 (126-173)||(43403894-43403941)
[»] chr3 (2 HSPs)
chr3 (14-61)||(4292984-4293031)
chr3 (151-195)||(11536252-11536296)
[»] scaffold0141 (1 HSPs)
scaffold0141 (126-192)||(16533-16599)
[»] scaffold0060 (1 HSPs)
scaffold0060 (126-195)||(18923-18991)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28138277 - 28138490
Alignment:
Q  1 ctattacagtattaatgagagaatctaaaaatggagaccaaaatgtctctgataaaagaaagggcgagaagcatagctttgctagtaaaccaaagaaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138277 ctattacagtattaatgagagaatctaaaaatggagaccaaaatgtctctgataaaagaaagggcgagaagcatagctttgctagtaaaccaaagaaagg 28138376  T
Q  101 aaactgtcaaacaacaaatacagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138377 aaactgtcaaacaacaaatacagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcg 28138476  T
Q  201 gtgaaacttgtcta 214  Q
    ||||||||||||||    
T  28138477 gtgaaacttgtcta 28138490  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 6982906 - 6982835
Alignment:
Q  124 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    ||||||||||||| |||| ||||||| |||||||||||| |||||||||| |||||||| ||||||| ||||    
T  6982906 tcacaaatatttaagattgcttttgattacacccttttttgaacgagtttgtatgtgctcactacttatgct 6982835  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 10501975 - 10502038
Alignment:
Q  130 atatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 193  Q
    |||||| ||||| ||||| | |||||||||||| ||||||||||  ||||||||||||||||||    
T  10501975 atatttgggattgctttttattacaccctttttggaacgagtttggatgtgcttactacttgtg 10502038  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 33417503 - 33417416
Alignment:
Q  124 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgt 211  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||| || ||||||||||||    
T  33417503 tcacaaatatttaggattacttttgattacaccctttttagaacgaatttgtatgtgctcactacttgtgctttttggtgaaacttgt 33417416  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 31610111 - 31610042
Alignment:
Q  120 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 189  Q
    |||||| || |||||| ||||| |||||||  ||||||||||||||||| |||| |||||||| ||||||    
T  31610111 acagtcgcatatatttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactact 31610042  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 15867381 - 15867420
Alignment:
Q  175 tatgtgcttactacttgtgctcttcggtgaaacttgtcta 214  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  15867381 tatgtgcttactacttgtgctttttggtgaaacttgtcta 15867420  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 6596588 - 6596498
Alignment:
Q  124 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 214  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||  ||||||| ||||||| |||| ||||||||||||||||||    
T  6596588 tcacaaatatttaggattgcttttgattacaccctttttagaatgagtttggatgtgctcactacttatgcttttcggtgaaacttgtcta 6596498  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 19168247 - 19168178
Alignment:
Q  126 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    |||||| ||| | ||| |||||||  |||||||||||||||||||||| |||||||| | || |||||||    
T  19168247 acaaatttttggaattgcttttgatgacaccctttttagaacgagtttgtatgtgctcaataattgtgct 19168178  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 40716013 - 40715928
Alignment:
Q  129 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 214  Q
    ||||||||||||| |||||||   || | |||||  ||||||||| |||||||| |||||||||| | || ||||||| |||||||    
T  40716013 aatatttaggattgcttttgatagcatcttttttgaaacgagtttgtatgtgctcactacttgtgttttttggtgaaatttgtcta 40715928  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 8308208 - 8308298
Alignment:
Q  124 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 214  Q
    |||||||||||| ||||||||||||| ||||  ||||||||||||||||| |||||||| ||||||||| || ||| ||||||||||||||    
T  8308208 tcacaaatatttgggattacttttgattacattctttttagaacgagtttgtatgtgctcactacttgtacttttcagtgaaacttgtcta 8308298  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 38836206 - 38836121
Alignment:
Q  129 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 214  Q
    ||||||| ||||| |||||||  ||||| ||||| |||||||||| ||| |||| |||||||||||| || |||||||||||||||    
T  38836206 aatatttgggattgcttttgataacaccatttttggaacgagtttgtatatgctcactacttgtgctttttggtgaaacttgtcta 38836121  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 49094543 - 49094614
Alignment:
Q  124 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    |||||||||||| ||||| |||||||  ||||| ||||| ||||| |||| |||||||| ||||||||||||    
T  49094543 tcacaaatatttgggattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactacttgtgct 49094614  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 30559359 - 30559431
Alignment:
Q  123 gtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    ||||||||| ||| ||||| |||||||  ||||||||||| |||| ||||| |||||||| || |||||||||    
T  30559359 gtcacaaatctttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgct 30559431  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 25862613 - 25862676
Alignment:
Q  130 atatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 193  Q
    |||||||||||| ||||| | |||||||||||| || |||||||  ||||||| ||||||||||    
T  25862613 atatttaggattgcttttaattacaccctttttggatcgagtttggatgtgctcactacttgtg 25862676  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 21949895 - 21949960
Alignment:
Q  124 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 189  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  21949895 tcacaaatatttgggattgcttttgattacaccctttttagaacgagtttgtatgtgctcactact 21949960  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 41411516 - 41411569
Alignment:
Q  120 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagttt 173  Q
    |||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||    
T  41411516 acagtcacaaatatttgggattgcttttgattacaccctttttggaacgagttt 41411569  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 40275205 - 40275158
Alignment:
Q  126 acaaatatttaggattacttttgactacaccctttttagaacgagttt 173  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  40275205 acaaatatttgggattgcttttgatgacaccctttttagaacgagttt 40275158  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 9447042 - 9446973
Alignment:
Q  120 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 189  Q
    ||||||||| |||||| ||||| |||||||  ||||||||||| ||||| |||| | |||||| ||||||    
T  9447042 acagtcacatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactact 9446973  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 14555960 - 14555887
Alignment:
Q  122 agtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    ||||||| |||||| ||||| |||||||  ||||||||||| |||||||||| ||| || | ||| ||||||||    
T  14555960 agtcacatatatttgggattgcttttgatcacaccctttttggaacgagtttgtatatgatcactgcttgtgct 14555887  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 18559723 - 18559799
Alignment:
Q  138 gattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 214  Q
    |||| ||||||| ||| ||||||||||||||||||| ||| ||||   ||||| | || || |||||||||||||||    
T  18559723 gattgcttttgattacgccctttttagaacgagtttgtatctgctcgttacttatactttttggtgaaacttgtcta 18559799  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 38346691 - 38346763
Alignment:
Q  123 gtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    |||||||||||||||||||  |||| || ||| ||||||  |||||||| | ||| |||| ||||||||||||    
T  38346691 gtcacaaatatttaggattgttttttaccacatccttttgtgaacgagtatgtatctgctcactacttgtgct 38346763  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 39735889 - 39735815
Alignment:
Q  120 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgc 194  Q
    ||||||||| |||||| ||||| ||||||| ||||||||| || |||||||||| |||||||| |||||||||||    
T  39735889 acagtcacatatattttggattgcttttgattacacccttcttggaacgagtttgtatgtgctcactacttgtgc 39735815  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 2049051 - 2048966
Alignment:
Q  129 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 214  Q
    ||||||| ||||| |||||||  ||||||||||| |||||||||| ||| |||| |||||||||||| || | |||||||||||||    
T  2049051 aatatttgggattgcttttgataacaccctttttggaacgagtttgtatatgctcactacttgtgctttttgatgaaacttgtcta 2048966  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 3958945 - 3959014
Alignment:
Q  126 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    |||||||||| ||||| |||||||  |||||||||||||||||||||| |||||||| |||| |||||||    
T  3958945 acaaatatttgggattgcttttgatgacaccctttttagaacgagtttgtatgtgctcactatttgtgct 3959014  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 42080685 - 42080758
Alignment:
Q  120 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 193  Q
    ||||||| | |||||| ||||| ||||||| |||||||||||| ||||||||||  ||||||| ||||||||||    
T  42080685 acagtcaaacatatttgggattgcttttgattacaccctttttggaacgagtttggatgtgctcactacttgtg 42080758  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 43403894 - 43403941
Alignment:
Q  126 acaaatatttaggattacttttgactacaccctttttagaacgagttt 173  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  43403894 acaaatatttgggattgcttttgatgacaccctttttagaacgagttt 43403941  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 4293031 - 4292984
Alignment:
Q  14 aatgagagaatctaaaaatggagaccaaaatgtctctgataaaagaaa 61  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  4293031 aatgagagagtctaaaaatggagaccaaaatgtctttgattaaagaaa 4292984  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 11536296 - 11536252
Alignment:
Q  151 tacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    ||||||||||||  ||||||||| |||||||| ||||||||||||    
T  11536296 tacacccttttttaaacgagtttgtatgtgctcactacttgtgct 11536252  T

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Target: scaffold0141 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 16533 - 16599
Alignment:
Q  126 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgt 192  Q
    |||||||||| ||||| |||||||  |||||||| || ||||||||||||||||||| ||| |||||    
T  16533 acaaatattttggattgcttttgatcacacccttcttggaacgagtttatatgtgctcactccttgt 16599  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 18991 - 18923
Alignment:
Q  126 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 195  Q
    |||||||||| ||||| |||||||  |||||||||| ||||||||||| |||||||| | || |||||||    
T  18991 acaaatatttgggattgcttttgatgacaccctttt-agaacgagtttgtatgtgctcaataattgtgct 18923  T

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