View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_high_18 (Length: 246)
Name: NF3803_high_18
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 376963 - 377191
Alignment:
| Q |
1 |
caaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaag |
100 |
Q |
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| T |
376963 |
caaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaag |
377062 |
T |
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| Q |
101 |
catgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggtaccaaaaatattgatgaaatgggtgatttgtt |
200 |
Q |
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| T |
377063 |
catgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggtaccaaaaatattgatgaaatgggtgatttgtt |
377162 |
T |
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| Q |
201 |
aaccactttgatgaatcaagagaagggat |
229 |
Q |
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| T |
377163 |
aaccactttgatgaatgaagagaagggat |
377191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 347533 - 347310
Alignment:
| Q |
1 |
caaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaag |
100 |
Q |
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| T |
347533 |
caaattgaagagtgcatattctatagacatatagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaagagaaaaaaatgaccaaag |
347434 |
T |
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| Q |
101 |
catgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggtaccaaaaatattgatgaaatgggtgatttgtt |
200 |
Q |
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| T |
347433 |
catgcaaagtatttgatcaatttgtatatgcaaatatagaatctagaagaaaggacataagaaaatgtagcaaaaatat---ggaaatggttgatttgct |
347337 |
T |
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| Q |
201 |
aaccactttgatgaatcaagagaaggg |
227 |
Q |
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| T |
347336 |
aacaactttgatgaaagaagagaaggg |
347310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 356192 - 355981
Alignment:
| Q |
1 |
caaattgaagaatgcatattctataggcatgttgtgccaagaagtgtttggaggttgcaacaattacttcaagttggtcaagagaaaaagatgaccaaag |
100 |
Q |
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||||| ||||| ||||||||||||| ||| ||||| | ||||||||||| ||||||| ||| |||||| ||||| |||||||||| |||||||| | |
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| T |
356192 |
caaatcgaagagggcatattctatagacataaagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaagagaaaaatatgaccaagg |
356093 |
T |
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| Q |
101 |
catgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggtaccaaaaatattgatgaaatgggtgatttgtt |
200 |
Q |
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| T |
356092 |
catgcaaaacctatgatcaatttgtatatgcaaatataaagtcaaagagggaagagctaagcaaatgtagaaaaaata---atgagatggttgatttgct |
355996 |
T |
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| Q |
201 |
aaccactttgatgaa |
215 |
Q |
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| T |
355995 |
aacaactttgatgaa |
355981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 337248 - 337312
Alignment:
| Q |
67 |
cttcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattc |
131 |
Q |
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| T |
337248 |
cttcaaatcggtgaagagaaaaaaatgactgaagcatgcaaagtatttgatcaattcctatattc |
337312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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