View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_high_20 (Length: 242)
Name: NF3803_high_20
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4708212 - 4707971
Alignment:
| Q |
1 |
atgtgtcacattttaacaaatatcaaagcaccaattatggtaaagaatggaccaattaagagataaacacaagaaagtgacatttgttgcttcaattcca |
100 |
Q |
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| T |
4708212 |
atgtgtcacatcttaacaaatatcaaagcaccaattatggtaaagaatggaccaattaagagataaacacaagaaagtgacatttgttgcttcaattcca |
4708113 |
T |
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| Q |
101 |
ttcaataataatcactcaattttttgaggttgagataaattacattattacttccatgaagacataacttccttcatcaagaataaacaatttacacaaa |
200 |
Q |
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| T |
4708112 |
ttcaataataatcactcaattttttgaggttgagataaattacattattacttccatgaagacataacttccttcatcaagaataaacaatttacacaaa |
4708013 |
T |
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| Q |
201 |
tcttgatcttcaatgaagaacacactacatataccctttgct |
242 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
4708012 |
tcttgatcttcaatgaagaacacgctacatataccttttgct |
4707971 |
T |
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