View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_high_3 (Length: 730)
Name: NF3803_high_3
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 339 - 724
Target Start/End: Complemental strand, 26642141 - 26641758
Alignment:
| Q |
339 |
atatagtgtaactgtacatgtaccagcatttattgatttgtgaattgcaggatagtattaatgaaatttatatttaaggaacccaggtagtatattgctc |
438 |
Q |
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| T |
26642141 |
atatagtgtaactgtacatgtaccagcatttataaatttgtgaattgcagaatagtattaatgaaatttatatttaaggaacccaggtagtatattgctt |
26642042 |
T |
|
| Q |
439 |
gatttttggactatcatatggttttgctctagaaaccaattcaatgaaatggtacactggtgactggtttaccttttccgaagcacgaatgtttaactcc |
538 |
Q |
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| T |
26642041 |
gatttttggact--catatggctttgctttagaaaccaattcaatgaaatggtacactggtgactggtttaccttttccgaaacacgaatgtttaactcc |
26641944 |
T |
|
| Q |
539 |
acatggatctaatttcaacagtttcctaagtctgaactctaaacatcctaagtcaccgctccattcatcttcaacacgacggcaacctgctcctcaccat |
638 |
Q |
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| T |
26641943 |
acatggatctaatttcaaccgtttcctaagtctgaactctaaacatcctaagtcaccgctccattcatcttcaacacgacggcaacctgctccccaccat |
26641844 |
T |
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| Q |
639 |
ttatcttcgccgtctctggcggtgccaaactgtttgctacccttcatcttcatcattcatctgcatccttgtctctgctcctcctc |
724 |
Q |
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| T |
26641843 |
ttaccttcgtcgtctctggcggtgccaaactgttcgctacccttcatcttcatcattcatctgcatccttgtctctgattctcctc |
26641758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 26642496 - 26642172
Alignment:
| Q |
1 |
agtaacgtttgattttatgcatatatacagtatacattacctaaattgataggttttttcatcacaaacacatgcgcgcgcacatatatatattctctag |
100 |
Q |
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| T |
26642496 |
agtaacgtttgattttatgcatatatacaatatacattatctaaattgataggttttttcatcacaaacacacgcgcgcgcacacatatat--tctctag |
26642399 |
T |
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| Q |
101 |
ttggagctaattatatacgtttgattgacgactatagtactaatttttaatgtcttctttcaaataaaataaaaaagttctttgacaggcagaggctgtt |
200 |
Q |
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| T |
26642398 |
ttggagctaattatatacgtttgattgaccactacagtactaatttttattgtattcttt----taaaa-aaaaaagttctttgacaggcagaggctgtt |
26642304 |
T |
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| Q |
201 |
cactaccatttttaatccgactcgacttgcaaatggtgaaggttcaactttagggacacttatatttgatattgaactggttggcctgaggcatcagtga |
300 |
Q |
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| T |
26642303 |
cactaccatttttaatccgactcgacttgcaaatggtgaaggttcaactttagggacacttatatttgatattgaactggttggcttgaggcatcagtga |
26642204 |
T |
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| Q |
301 |
attcagaatgatccagccatctacaaaacaaa |
332 |
Q |
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| T |
26642203 |
attcagaatgatccagcaatctagtaaacaaa |
26642172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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