View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_high_5 (Length: 506)
Name: NF3803_high_5
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 26 - 496
Target Start/End: Complemental strand, 40992707 - 40992235
Alignment:
| Q |
26 |
gttcagacttttgtagagaacatatgttacattattttcttatgaatgcatatgatattatatcatgatgtgaccaaattgttcttttcattataagtaa |
125 |
Q |
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| T |
40992707 |
gttcagacttttgtagagaacatatgttatattattttcttatgaatgcatatgatattatatcatgatgtgaccaaattgttcttttcattataagtaa |
40992608 |
T |
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| Q |
126 |
atcaaagtttaaataataaattaaagaagtagaagtcacgaaaggtttggctctcattcgttnnnnnnnnnnt--cctaataatttggtgttcgttataa |
223 |
Q |
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| T |
40992607 |
atcaaagtttaaataatgaattaaagaagtagaagtcacgaaaggtttggctctcgcccgttaaaaaaaaaaaaccctaataatttggtgttcgttataa |
40992508 |
T |
|
| Q |
224 |
aggtaagtaaaatattaccaagaattctatacatgaattgaattcaagttctcaagaacgatttgccttaaggaacttattaaccatttgagtttaatta |
323 |
Q |
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| T |
40992507 |
aggtaagtaaaatattaccaagaattttatacatgaattgaattcaagttctcaagaacgatttatcttaagaaacttattaaccacttgagtttaatta |
40992408 |
T |
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| Q |
324 |
ctttaattttagttgaattttaatcatttgtaaaattgaattattgatatgttcctttcacttacaagcaaacaacaaaacatat-cttgctagggaatg |
422 |
Q |
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| T |
40992407 |
ctttaattttagttgaattttaatcatttgtaaaattgaattattgatatgttcctttcac-tacaagcaaacaacaaaacatatgcttgctagggaatg |
40992309 |
T |
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| Q |
423 |
ctaattttctagattcaaccttggatcttatgaatatcatgcatgtggcctaatttcacgtcacctaacctatg |
496 |
Q |
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| T |
40992308 |
ctaattttctagattcaaccttggatcttatgaatatcatgcatgtggcctaatttcacgtcacctaacctatg |
40992235 |
T |
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