View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_high_7 (Length: 446)
Name: NF3803_high_7
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 41 - 431
Target Start/End: Complemental strand, 50445485 - 50445097
Alignment:
| Q |
41 |
tcctaaagattggactacataagaataaaatgctcaacaatctgagtttccacaaattcgataaaattgtctttcaatgtttgtctttgagtggaagata |
140 |
Q |
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| T |
50445485 |
tcctaaagattggactacataagaataaaatgctcaacaatctgagtttccacaaattccataaaattgtctttcaatgtttgtctttgagtggaagata |
50445386 |
T |
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| Q |
141 |
catgattgtttctcattatgcagaatgttgatagaagactcaaacaagatgaatgactagatagaaaaagaacacagcgatgatgttatacttgcatgaa |
240 |
Q |
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| T |
50445385 |
catgattgtttctcattatgcagaatgttgatagaagactcaaataagatgaatggctagatagaaaaagaacacagcgatgatattatacttgcatgaa |
50445286 |
T |
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| Q |
241 |
gaatgcattaggttgggcatgcaattaaaacagtcttcttcaaaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaact |
340 |
Q |
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| T |
50445285 |
gaacgcattaggttgggcatgcaattaaaacagtcttcttcaaaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaact |
50445186 |
T |
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| Q |
341 |
cccccatcaagcttaattttcggaaatgccaagattttattgtcaaaacttggcatgccaaacctctttgtgatatatctttggtgattaa |
431 |
Q |
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| T |
50445185 |
cccccatcaagctcaattttcggaaacgccaagattttattgtcaaaacttggcatgccaaacctc--tgtgatatatctttggtgattaa |
50445097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 256 - 431
Target Start/End: Complemental strand, 48395982 - 48395810
Alignment:
| Q |
256 |
ggcatgcaattaaaacagtcttcttcaaaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaactcccccatcaagctta |
355 |
Q |
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| T |
48395982 |
ggcatgcaattaaaacagtcttcttcgaaactggtaaggtaagaactgaaatcaagattaagtgtg---tgcatgtggatgaactcccccatcaagctca |
48395886 |
T |
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| Q |
356 |
attttcggaaatgccaagattttattgtcaaaacttggcatgccaaacctctttgtgatatatctttggtgattaa |
431 |
Q |
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| T |
48395885 |
atttccgaaaatgccaagaccttattgtcagaacttggcatgccaaacctctttgtgagatatctctggtgattaa |
48395810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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