View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_10 (Length: 397)
Name: NF3803_low_10
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 398991 - 399358
Alignment:
| Q |
16 |
aatgatactgtacatgttgagcccattccaacaaacgatgatggtaatgcagataaagttcagcatatgactaatgaatctcaacccaaacaaaaggaac |
115 |
Q |
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| T |
398991 |
aatgatactgtacatgttgagcccattccaacaaacgatgatggtaatgcagataaagttcagcatatgactgatgaatctcaacccaaacaaaaggaac |
399090 |
T |
|
| Q |
116 |
caaatgttgcatctttaaagggctcgcaaaagccagctgctagtgataaagctgtagttgatactgtcaatgattgtggagcagagttatcaagtgacag |
215 |
Q |
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| T |
399091 |
caaatgttgcatctttaaagggctcgcaaaagccagctgctagtgataaagctgtagttgatactgtcaatgattgtggagcagagttatcaagtgacag |
399190 |
T |
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| Q |
216 |
tgatgtgtattacaatgaaaagattgatcttacagcgataaaggatgaattcctgagttcccagcatgcttccggtcaagatttgccagcaatgactgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
399191 |
tgatgtgtattacaatgaaaagattgatcttacagcgataaaggctgaattcctgagttcccagcatgcttccggtcaagatttgccagcaatgactgaa |
399290 |
T |
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| Q |
316 |
tcaagaggacaaaacctctgcagtaaatgcaatgaagctggccaattactggtttgtactacttgccc |
383 |
Q |
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| T |
399291 |
tcaagaggacaaaacctctgcagtaaatgcaatgaagctggccaattactggtttgtactacttgccc |
399358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 373
Target Start/End: Original strand, 395905 - 396259
Alignment:
| Q |
16 |
aatgatactgtacatgttgagcccattccaacaaacgatgatggtaatgcagataaagttcagcatatgactaatgaatctcaacccaaacaaaaggaac |
115 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
395905 |
aatgatattgtacatgttgagcccattccaacaaa---tgatggtaatgctgataaagttcagcatatgaataatgaatctcaacccaaacaaaaggaac |
396001 |
T |
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| Q |
116 |
caaatgttgcatctttaaagggctcgcaaaagccagctgctagtgataaagctgtagttgatactgtcaatgattgtggagcagagttatcaagtgacag |
215 |
Q |
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||||||||||||||||||| ||||| |||||||||| ||| | |||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
396002 |
caaatgttgcatctttaaatggctcacaaaagccagttgccaatgataaagctttagtttatactgtctttgattgtggagcagagttatcaagtgacag |
396101 |
T |
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| Q |
216 |
tgatgtgtattacaatgaaaagattgatcttacagcgataaaggatgaattcctgagttcccagcatgcttccggtcaagatttgccagcaatgactgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||| |
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| T |
396102 |
tgatgtgtattacaatgaaaagattgatcttacagcgaaaaaggatgaattcctgagctcccagcacgcttttggtcaagatttgccagcaatgattgaa |
396201 |
T |
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| Q |
316 |
tcaagaggacaaaacctctgcagtaaatgcaatgaagctggccaattactggtttgta |
373 |
Q |
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|||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
396202 |
tcaagaggacgaaacctttgcagtaagtgcaatgaatctggccaattactggtttgta |
396259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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