View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_12 (Length: 288)
Name: NF3803_low_12
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 53257743 - 53257483
Alignment:
| Q |
17 |
caaataaacaagaagaaaggattagaaaaacctactcgcgccacttcttctcttcatctgcattcaagtcataatctggatgtatccttttgaccaactt |
116 |
Q |
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| T |
53257743 |
caaataaacaagaagaaaggattagaaaaacctactcgcgccacttcttctcttcatctgcattcaagtcataatctggatgtatccttttgaccaactt |
53257644 |
T |
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| Q |
117 |
atcaattatgtctagcaaaagggggataaagttcacagttcagaacaacattctatacataataacacaataaaccacaaatggaaatattaataagaca |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53257643 |
atcaattatgtctagcaaaagggggaaaaagttcacagttcagaacaacattctatacataataacacaataaaccacaaatggaaatattaataagaca |
53257544 |
T |
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| Q |
217 |
attacaaacctgaagaatcaaccaattgttcaccatcaacggtgacaataggcaccttctt |
277 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
53257543 |
attacaaacctgaagaatcaaccaactgttcaccatcaacgatgacaataggcaccttctt |
53257483 |
T |
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