View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_14 (Length: 270)
Name: NF3803_low_14
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_14 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 44949446 - 44949707
Alignment:
| Q |
1 |
atgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaag |
100 |
Q |
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| T |
44949446 |
atgaaaatgcatttcaagcacaccttctttagagcatctataaaacccgtatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaag |
44949545 |
T |
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| Q |
101 |
gctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcctttagggattt |
200 |
Q |
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| T |
44949546 |
gctcaagttctgctgccatgtagtgctttatatcttcgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcctttagggattt |
44949645 |
T |
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| Q |
201 |
attcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgt |
262 |
Q |
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| T |
44949646 |
attcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgt |
44949707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 6470321 - 6470464
Alignment:
| Q |
27 |
ctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgc |
126 |
Q |
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| T |
6470321 |
ctttagagcgtctataaaaaccgtatcaagactcccttcactgtaaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatc |
6470420 |
T |
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| Q |
127 |
tttatatctttgttttgaatgttaggaacttcctttaccatact |
170 |
Q |
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| T |
6470421 |
tttatacctttgtttttaatggaaggaagttcctttaccatact |
6470464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 44943742 - 44943804
Alignment:
| Q |
126 |
ctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
188 |
Q |
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| T |
44943742 |
ctttatacctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
44943804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 44943657 - 44943734
Alignment:
| Q |
1 |
atgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgc |
78 |
Q |
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|||||||||||||||||| |||| |||||||||| |||||| ||| || ||||||| |||||||||| |||||||||| |
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| T |
44943657 |
atgaaaatgcatttcaagtacacattctttagagtatctatcaaaaccgtatcaagtttcccatcaccataaaaatgc |
44943734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 419385 - 419220
Alignment:
| Q |
5 |
aaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctc |
104 |
Q |
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||||||||| ||||||| ||||||||||||||||||||| || ||||||| |||| || || ||||||||||||||||| ||||||| |||||||| |
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| T |
419385 |
aaatgcattgcaagcacgttttctttagagcatctataaaaaccgtatcaagactcccttcgctgtaaaaatgcccaccagttatatccttcgaaggctc |
419286 |
T |
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| Q |
105 |
aagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatact |
170 |
Q |
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| T |
419285 |
aaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccatact |
419220 |
T |
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