View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_15 (Length: 266)
Name: NF3803_low_15
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 25371953 - 25371719
Alignment:
| Q |
1 |
cgccattctcttctgcctcctctcaatagtcttttccatcatctcatctgaatacttgtgcttccttccaacgccgctgccaccagcacctccctttgaa |
100 |
Q |
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| T |
25371953 |
cgccattctcttctgcctcctctcaatagtcttttccatcatctcatctgaatacttgtgcttccttccaacgccactgccaccagcacctccctttgaa |
25371854 |
T |
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| Q |
101 |
tctgaacatgtagatgataaatgcgttgtcgttgccccgattggtatttttgaataaccaatctccataagtttgttctcataaaccgaattagcaacac |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25371853 |
tctgcacatgtagatgataaatgcgttgtcgttgccccgattggtatttctgaataaccaatttccataagtttgttctcataaaccgaattagcaacac |
25371754 |
T |
|
| Q |
201 |
cgaaatctggacacaaccctatcatccgttgattt |
235 |
Q |
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||||||| ||||||| ||||| ||| |||||||| |
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| T |
25371753 |
cgaaatccggacacattcctattatcggttgattt |
25371719 |
T |
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