View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_18 (Length: 247)
Name: NF3803_low_18
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 376758 - 376522
Alignment:
| Q |
1 |
caattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttca |
100 |
Q |
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| T |
376758 |
caattcaaagcttctttgtttaaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttca |
376659 |
T |
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| Q |
101 |
aatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattt |
200 |
Q |
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| T |
376658 |
aatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattt |
376559 |
T |
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| Q |
201 |
tggtaaaccaaggtcccatgaactcaccactacctct |
237 |
Q |
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| T |
376558 |
tggtaaaccaaggtcccatgaactcaccactacctct |
376522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 347750 - 347964
Alignment:
| Q |
13 |
tctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatga |
112 |
Q |
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| T |
347750 |
tctttgtttgaaaatagagtgaaaaagagacctattgtatttccatttctccgaatcagcgttgaatattccatctccaaaggcttcaaaaatctcatga |
347849 |
T |
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| Q |
113 |
aattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattttggtaaaccaag |
212 |
Q |
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| T |
347850 |
aattcttgaccctttacataattatcaaaacacttgctcatcatgtgatgcacgttcatagggtcactagtaaccaaatagttcatgttggtaaaccaag |
347949 |
T |
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| Q |
213 |
gtcccatgaactcac |
227 |
Q |
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| T |
347950 |
gtcccatgaactcac |
347964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 356419 - 356623
Alignment:
| Q |
23 |
aaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgac |
122 |
Q |
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||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
356419 |
aaaatagagtgaaaaagagacctattgtatttccatgtctccgaatcagtgttgaatattccatctccaaaggcttcaaatatctcatgatattcatgac |
356518 |
T |
|
| Q |
123 |
ccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcccatgaa |
222 |
Q |
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| T |
356519 |
ccttaacataattgtcaaaagacttgcttaacatgtgatgcaagttgatggggtcactagtgaccaaatagttcatgctggtaaaccaaggtcccatgaa |
356618 |
T |
|
| Q |
223 |
ctcac |
227 |
Q |
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||||| |
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| T |
356619 |
ctcac |
356623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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