View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_2 (Length: 792)
Name: NF3803_low_2
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_2 |
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| [»] scaffold0543 (2 HSPs) |
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| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 116 - 775
Target Start/End: Original strand, 49971766 - 49972423
Alignment:
| Q |
116 |
aaacttccaacttagactgctgtcaattttaagtgaacactttgtaagatgctataaaagacattccggaacaatatctgggtcctcccaatgtgccctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49971766 |
aaacttccaacttagactgctgtcaattttaagtgaacactttgtaagatgcgataaaagacatttcggaacaatatctgggtcctcccaatgtgccctg |
49971865 |
T |
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| Q |
216 |
cataannnnnnncctttatgattttcatcgaaattgagaatgagttgcgagaagaagagaatgattgtgacggcggcattttaggtaggaagaaaagaaa |
315 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
49971866 |
cataatttttttcctttatgattttcatcgaaattgagaatgagttgcgagaagaagaggatgattgtgacggcggcatttttggtaggaagaaaagaaa |
49971965 |
T |
|
| Q |
316 |
gaatgtgaataagaagtgaatctgggagagcactgattctgnnnnnnnnnnnnnnnnnnngaattggaattgaatgtcctagccgccggggggacatgat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49971966 |
gaatgtgaataagaagtgaatctgggagagcactgattctgtcttcttcttctt------gaattggaattgaatgtcctagccgccggggggacatgat |
49972059 |
T |
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| Q |
416 |
tattgcaatatcatatgactcttgataagagtata----taaagaagagtcactcctcatcatacaaatcaattttcttctttatgtcttgcaactccct |
511 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49972060 |
tattgcaatatcatatgactcttgataagagtatatatataaagaagagtcactcctcatcatacaaatcaattttcttctttatgtcttgcaactccct |
49972159 |
T |
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| Q |
512 |
aacaatatatccctaacttgtcttgcaagtacgtataattgttattctagagcataaatacctacttaggcccctctctatcaataaccgcatatacaaa |
611 |
Q |
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| T |
49972160 |
aacaatatatccctaacttgtcttgcatgtacgtataattgttattctagagcataaatacctacttaggcccctctctatcaataaccgcatatacaaa |
49972259 |
T |
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| Q |
612 |
ttcttaaacatatcctatacaggaacagccacacttcattgtccgctaactataacatgattataggatgagatgttgcatacaaacaatcttaagattc |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49972260 |
ttcttaaacatatcctatacaggaacagccacacttcattgtccgctaactacaacatgattataggatgagatgttgcatacaaacaatcttaagattc |
49972359 |
T |
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| Q |
712 |
aggatgaagcaaaaatcccaccatgtagtttgcatggcaaaaataacgagcatttgtaaactat |
775 |
Q |
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| T |
49972360 |
aggatgaaacaaaaatcccaccatgtagtttgcatggcaaaaataacgagcatttgtaaactat |
49972423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 49971611 - 49971695
Alignment:
| Q |
9 |
caaataaataaaagatgacacactgttgaattccttgcgcacaaagataattacatgaacatttgttcttttgcatctgtatcta |
93 |
Q |
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| T |
49971611 |
caaataaataaaagttgacacactgccgaattccttgcgcacaaagataattccatgaacatttggtgttttgcatctgtatcta |
49971695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 3910 - 3963
Alignment:
| Q |
303 |
ggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctg |
356 |
Q |
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| T |
3910 |
ggaagaaaagaaagaatgtgataaagaagtgaatccggtagagcactgattctg |
3963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 1999 - 2066
Alignment:
| Q |
6 |
attcaaataaataaaagatgacacactgttgaattccttgcgcacaaagataattacatgaacatttg |
73 |
Q |
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| T |
1999 |
attcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttg |
2066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 5456 - 5509
Alignment:
| Q |
303 |
ggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctg |
356 |
Q |
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| T |
5456 |
ggaagaaaagaaagaatgtgataaagaagtgaatccggtagagcactgattctg |
5509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 3545 - 3612
Alignment:
| Q |
6 |
attcaaataaataaaagatgacacactgttgaattccttgcgcacaaagataattacatgaacatttg |
73 |
Q |
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||||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||||||||||| |
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| T |
3545 |
attcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttg |
3612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 432 - 478
Target Start/End: Original strand, 43288293 - 43288339
Alignment:
| Q |
432 |
gactcttgataagagtatataaagaagagtcactcctcatcatacaa |
478 |
Q |
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| T |
43288293 |
gactcttgataagagtttataaagaggaggcactcctcatcttacaa |
43288339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 8902382 - 8902424
Alignment:
| Q |
428 |
atatgactcttgataagagtatataaagaagagtcactcctca |
470 |
Q |
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| T |
8902382 |
atatgactcttgataagagtttataaagatgagacactcctca |
8902424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 10542137 - 10542092
Alignment:
| Q |
433 |
actcttgataagagtatataaagaagagtcactcctcatcatacaa |
478 |
Q |
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| T |
10542137 |
actcttgataagagtttataaagaggagacactcctcatcttacaa |
10542092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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