View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_23 (Length: 239)
Name: NF3803_low_23
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 26432009 - 26431917
Alignment:
| Q |
16 |
caatagtggtggttcaattcagaagcttgaggttaagaagcacttgaagaatttgaacagaccacctgttaagtccatcaaggtagagataag |
108 |
Q |
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| T |
26432009 |
caatagtggtggttcaattcagaagcttgaggttaagaagcacttgaagaatttgaacagaccacctgttaagtccatcaaggtagagataag |
26431917 |
T |
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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 26431864 - 26431784
Alignment:
| Q |
159 |
cattggttgcataacggttttatttctaattgggatttgtaaaaaattaaactttttgggtttgaaaggaactttagttct |
239 |
Q |
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| T |
26431864 |
cattggttgcataacggttttatttctaattgggatttgtaaaaaattaaactttttgggtttgaaaggaactttagttct |
26431784 |
T |
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