View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3803_low_27 (Length: 219)

Name: NF3803_low_27
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3803_low_27
NF3803_low_27
[»] chr2 (1 HSPs)
chr2 (15-201)||(42206181-42206367)
[»] chr5 (2 HSPs)
chr5 (139-176)||(6061452-6061489)
chr5 (139-176)||(6058546-6058583)
[»] chr4 (2 HSPs)
chr4 (136-179)||(39992134-39992177)
chr4 (139-191)||(21001329-21001381)
[»] chr3 (2 HSPs)
chr3 (138-172)||(36418200-36418234)
chr3 (139-179)||(45466467-45466507)
[»] chr7 (1 HSPs)
chr7 (134-183)||(8227585-8227634)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 42206367 - 42206181
Alignment:
Q  15 cacagaatatcattggttaccaattggaggagcagaacgtactatcactcatcagaggaactaaaccttcaaagttaacaaaatataactattataccca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206367 cacagaatatcattggttaccaattggaggagcagaacgtactatcactcatcagaggaactaaaccttcaaagttaacaaaatataactattataccca 42206268  T
Q  115 aaatctaaataagggttatatggttttgtctaatatgcacaaacaaattagtattgtaccatgcacaaatttgtttttcagcattag 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206267 aaatctaaataagggttatatggttttgtctaatatgcacaaacaaattagtattgtaccatgcacaaatttgtttttcagcattag 42206181  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 6061452 - 6061489
Alignment:
Q  139 tttgtctaatatgcacaaacaaattagtattgtaccat 176  Q
    |||||||||||||||||||||||||||||||| |||||    
T  6061452 tttgtctaatatgcacaaacaaattagtattgcaccat 6061489  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 6058546 - 6058583
Alignment:
Q  139 tttgtctaatatgcacaaacaaattagtattgtaccat 176  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  6058546 tttgtctaatatgcacaaacaaattaggattgcaccat 6058583  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 39992177 - 39992134
Alignment:
Q  136 ggttttgtctaatatgcacaaacaaattagtattgtaccatgca 179  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||    
T  39992177 ggttttgtctaatatacacaaataaattagtattgcaccatgca 39992134  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 21001329 - 21001381
Alignment:
Q  139 tttgtctaatatgcacaaacaaattagtattgtaccatgcacaaatttgtttt 191  Q
    |||||||||| ||| ||| ||||||||||||| |||||||||||  |||||||    
T  21001329 tttgtctaatgtgcgcaagcaaattagtattgcaccatgcacaagcttgtttt 21001381  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 36418234 - 36418200
Alignment:
Q  138 ttttgtctaatatgcacaaacaaattagtattgta 172  Q
    |||||||||||||||||||| ||||||||||||||    
T  36418234 ttttgtctaatatgcacaaaaaaattagtattgta 36418200  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 45466467 - 45466507
Alignment:
Q  139 tttgtctaatatgcacaaacaaattagtattgtaccatgca 179  Q
    ||||||||||| |||||||||||||||||||| | ||||||    
T  45466467 tttgtctaatacgcacaaacaaattagtattgcaacatgca 45466507  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 8227634 - 8227585
Alignment:
Q  134 atggttttgtctaatatgcacaaacaaattagtattgtaccatgcacaaa 183  Q
    ||||||||||||||| ||||||  ||||||||| |||||||| |||||||    
T  8227634 atggttttgtctaatgtgcacacgcaaattagttttgtaccacgcacaaa 8227585  T

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