View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_4 (Length: 513)
Name: NF3803_low_4
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 286 - 500
Target Start/End: Original strand, 42629018 - 42629227
Alignment:
| Q |
286 |
gaggtcttaaatgttaattttgacgtcatatggagatggtgattaggagttttgtgtaagcaataacannnnnnnnnnnnnnagtagtaggaattagaga |
385 |
Q |
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| T |
42629018 |
gaggtcttaaatgttaattttgacgtcatatagagatggtgattaggagttttgtgtaagcaaaaacattttttatttttt-attagtaggaattagaga |
42629116 |
T |
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| Q |
386 |
atatatatgtcaaaaatggaaaaggaatgagacaagcataaataaatgcatgtgaattagtagccgtaaggaatggtccctccctatgtgagtttcaatc |
485 |
Q |
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| T |
42629117 |
atatatatgtcaaaaatggaaaaggaatgagacaagcataa----atgcatgtgaattagtagccgtaaggaatggtccctccctatgtgagtttcaatc |
42629212 |
T |
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| Q |
486 |
cgtcattttccgcct |
500 |
Q |
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| T |
42629213 |
cgtcattttccgcct |
42629227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 42628816 - 42628953
Alignment:
| Q |
84 |
gacaaggcagcgaatgtctcttatatagtattaaaattgtgatatactattaatgtagtttaaaaacatatgtataaacactatgaattatgaaaggaaa |
183 |
Q |
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| T |
42628816 |
gacaaggcagcgaatgtctcttatatagtattaaaattgtgatatactattaatgtagtttaaaaacatatgtataaacactatgaattatgaaaggaaa |
42628915 |
T |
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| Q |
184 |
caaaaataatacatgttataaaaataatccaaattaca |
221 |
Q |
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| T |
42628916 |
caaaaaaaatacatgttataaaaataatccaaattaca |
42628953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 42628563 - 42628608
Alignment:
| Q |
6 |
tgtgtgttatctttgagttaaggccatgtcaatttctaattttatc |
51 |
Q |
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| T |
42628563 |
tgtgtgttatctttgagttaaggccatgtcaatttctaattttatc |
42628608 |
T |
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