View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3803_low_9 (Length: 401)
Name: NF3803_low_9
Description: NF3803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3803_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 46037872 - 46037487
Alignment:
| Q |
1 |
tattcaacggttgaatgtagttgttgattccatagcaagagtggctacatgttggtctagtccatatattttttataagtgtattattatcttgtatcaa |
100 |
Q |
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| T |
46037872 |
tattcaacggttgaatgtagttgttgattccatagcaagagtgactacatgttggtctagtccatatattttttataagtacattattatcttgtatcaa |
46037773 |
T |
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| Q |
101 |
ggtttatttcaataatttaatccaagtcaaaattcattaagtgaagagagatgaattatatggtactaacctatattattgataaaccttgttaattctg |
200 |
Q |
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| T |
46037772 |
ggtttatttcaataatttaacccaagtcaaaattcattaagtgaagagagatgaattatatggtactaacctatattattgacaaaccttgttcattctg |
46037673 |
T |
|
| Q |
201 |
atcagcttgaacaaaatcattgagaagtatcgtcaatgttgcttcaacaatatgtctgagaatggtgacttaggagaacatgagtcacaggttttccctt |
300 |
Q |
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| T |
46037672 |
atcagcttgaacaaaatcattgagaagtatcgtcaatgttgcttcaacaatatgtctgagaatggttacttaggagaacatgagtcacaggttttccctt |
46037573 |
T |
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| Q |
301 |
ctttgtcccatgtaacaaagttgattatgcttattttcataaatcgggtgcttcatatatagaattttactcttaacattttcgtg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46037572 |
ctttgtcccatgtaacaaagttgattatgcttattttcataaatcgggtgcttcatatatagaattttactcttaacattttcgtg |
46037487 |
T |
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