View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_high_1 (Length: 1569)
Name: NF3804_high_1
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 1402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1402; E-Value: 0
Query Start/End: Original strand, 75 - 1569
Target Start/End: Original strand, 28266019 - 28267508
Alignment:
| Q |
75 |
tcaagattattatcatgcttaaatttgaaattttgttgtgttactctgtatctctattgtaatgtatggaaaattggaattcacttgtgatgtaaggtga |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
28266019 |
tcaagattattatcatgcttaaatttgaaattttgttgtgttactctgtatctctattgtaatgtatggaaaattggaattcacttgcgatgt-----ga |
28266113 |
T |
|
| Q |
175 |
ttggtgattatatgcaatgttatattttatttgcttgattgcgttttctttaattttattgatcttgtactttaaaaatgatgttctattttcaactcgt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28266114 |
ttggtgattatatgcaatgttatattttatttgcttgattgtgttttctttaattttattgatcttgtactttaaaaatgatgttctattttcaactcgt |
28266213 |
T |
|
| Q |
275 |
tattgtgcagttaactccgcattccgataatggattcatattctttgaagtccgtattcgatttgcctcaaccatttcaatcatgttttagtttcaggta |
374 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28266214 |
tattgtgcagttaactccgcattcccataatggattcatattctttgaagtccgtatttgatttgcctcaaccatttcaatcatgttttagtttcaggta |
28266313 |
T |
|
| Q |
375 |
ctatacacttttcttttaatatgtgtgagagatataataggttgctactagatatgcttagcttcctcgaagcttttaacccgtatcatattttacgaag |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28266314 |
ctatacacttttcttttaatatgtgtgagagatataataggttgctactagatatgcttagctgcctcgaagcttttaacctgtatcatattttacgaag |
28266413 |
T |
|
| Q |
475 |
cactgacatgacacatacacggacccttgacacgactttgacacatgacatagatacatcgacaccggtaataatttgagaaaataaattaattggatgt |
574 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28266414 |
cactgacatgacacagacatggacccttgacacgactttgacacatgacatagatacatcgacaccggtaataatttgagaaaataaattaattggatgt |
28266513 |
T |
|
| Q |
575 |
aaacacatgagttggtaccgatgcgtgtcggacacgggggcacaccta--atatcataagtgtctgtgcttcagagaccatattagaaaatggtgctcat |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28266514 |
aaacacatgagttggtaccgatgcgtgtcggacacgggggcacacctataatatcataagtgtctgtgcttcagagaccatattagaaaatggtgctcat |
28266613 |
T |
|
| Q |
673 |
ttagtacgtatctttgtgaaataacataataatttgtgatttttcagtacaatttcaaacatctgatagtcatggattagaaaagaatacgcatttaaag |
772 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28266614 |
ttagtacgtatctttgtgaaataacataataatttgtgatttttcagtacaatttcaaacatctgatagtcatggattagaaaagaatacgcatttaaag |
28266713 |
T |
|
| Q |
773 |
tgatctcacaaaggttcttacattagtataatgattaacactatgttgtgtggtatacagatattttaattcacttcagagtgaatgctttcctacctgt |
872 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28266714 |
tgatctcacaaaggttcttacattagtataatgattaacactatgttgtgtggtatacagatattttaattcacttcagagtgaatgctttcctacctgt |
28266813 |
T |
|
| Q |
873 |
taccactctgatgtaaacatggtcatctctgctccgaccggaagtggtaaaacagtactctttgagctttgcattttgaggcttctctccaggtccatat |
972 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28266814 |
taccactctgatgtaaacatggtcatctctgctccgaccggaagtggtaaaacagtactctttgagctttgcattttgaggcttctctccaggtccatat |
28266913 |
T |
|
| Q |
973 |
catctgagggaagattcatacatgtgaagggatctcttaaaacagtaagtaatttctcacaaaattccggctctgaaaacttttctattagtaatatttc |
1072 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28266914 |
catctgagggaagattcatacatgtgaagggatctcttaaaacagtaagtaatttctcacaaaattccggctctg-aaacttttctattagtaatatttc |
28267012 |
T |
|
| Q |
1073 |
tctgtagtagtattgatttgtgttcaagaaagataaaactggtagacgggttctctttcttttagtgtcagtggggtaaacccagtacttttttgccaca |
1172 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| | |
|
|
| T |
28267013 |
tctgtagtagtattgatttgtgttcaagaaaggtaaaactggtagacaggttctctttcttttagtgtcagtggtgtaaacccagtac-tttttgccata |
28267111 |
T |
|
| Q |
1173 |
aagaagactgatattgtattggtgcataaaaaacagtctacgcttttgtatggtgaatcactgaataatttgaagcttacaacttgaaatctattttcat |
1272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267112 |
aagaagactgatattgtattggtgcataaaaaacagtctacgcttttgtatggtgaatcactgaataatttgaagcttacaacttgaaatctattttcat |
28267211 |
T |
|
| Q |
1273 |
tatcatgtcttgttaactaattattggtacggttatctttttacttggtgtcaagatctatattgccccatctaaggctttagttcaggagaaggtccgt |
1372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267212 |
tatcatgtcttgttaactaattattggtacggttatctttttacttggtgtcaagatctatattgccccatctaaggctttagttcaggagaaggtccgt |
28267311 |
T |
|
| Q |
1373 |
gattggaatcagaaatttggaccatgggggatttgttgcctggagctgacaggtgacaatgaatcttacactccaagaaatataaatgaagcagatatca |
1472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267312 |
gattggaatcagaaatttggaccatgggggatttgttgcctggagctgacaggtgacaatgaatcttacactccaagaaatataaatgaagcagatatca |
28267411 |
T |
|
| Q |
1473 |
ttctaaccactccagaggtcagtattcaaatgagagttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttcttttt |
1569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267412 |
ttctaaccactccagaggtcagtattcaaatgagagttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttcttttt |
28267508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 26655768 - 26655707
Alignment:
| Q |
75 |
tcaagattattatcatgcttaaatttgaaattttgttgtgttactctgtatctctattgtaa |
136 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
26655768 |
tcaagattattatcatgcttaaagttgacattttattgtgttactttgtatctctattgtaa |
26655707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 517 - 582
Target Start/End: Original strand, 34625716 - 34625781
Alignment:
| Q |
517 |
acatgacatagatacatcgacaccggtaataatttgagaaaataaattaattggatgtaaacacat |
582 |
Q |
| |
|
|||||| || ||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
34625716 |
acatgaaattgatacatcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacat |
34625781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Original strand, 34598538 - 34598585
Alignment:
| Q |
535 |
gacaccggtaataatttgagaaaataaattaattggatgtaaacacat |
582 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
34598538 |
gacaccgataataatttgagaaaatgaattaattggatgtaatcacat |
34598585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 530 - 569
Target Start/End: Complemental strand, 14244091 - 14244052
Alignment:
| Q |
530 |
acatcgacaccggtaataatttgagaaaataaattaattg |
569 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
14244091 |
acatcgacaccggtagtaatttgagaaaatgaattaattg |
14244052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 527 - 582
Target Start/End: Original strand, 12709995 - 12710050
Alignment:
| Q |
527 |
gatacatcgacaccggtaataatttgagaaaataaattaattggatgtaaacacat |
582 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
12709995 |
gatacgtcgatatcggtaataatttgagaaaataaattaattgaacgtaaacacat |
12710050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 535 - 576
Target Start/End: Complemental strand, 32369971 - 32369930
Alignment:
| Q |
535 |
gacaccggtaataatttgagaaaataaattaattggatgtaa |
576 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
32369971 |
gacaccgataataatttgagaaaatgaattaattgaatgtaa |
32369930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 576
Target Start/End: Original strand, 2517107 - 2517148
Alignment:
| Q |
535 |
gacaccggtaataatttgagaaaataaattaattggatgtaa |
576 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
2517107 |
gacaccggtaataatttgagaaaatgaattaattgaatgtaa |
2517148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 540 - 583
Target Start/End: Original strand, 29096951 - 29096994
Alignment:
| Q |
540 |
cggtaataatttgagaaaataaattaattggatgtaaacacatg |
583 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
29096951 |
cggtaataatttaagaaaataaattaattgaatgtaatcacatg |
29096994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 1979413 - 1979459
Alignment:
| Q |
536 |
acaccggtaataatttgagaaaataaattaattggatgtaaacacat |
582 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
1979413 |
acaccggtaataatttgagaaaattaattaattaaatgtaatcacat |
1979459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 543 - 576
Target Start/End: Complemental strand, 10170437 - 10170404
Alignment:
| Q |
543 |
taataatttgagaaaataaattaattggatgtaa |
576 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
10170437 |
taataatttgagaaaataaattaattgaatgtaa |
10170404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 18542278 - 18542221
Alignment:
| Q |
527 |
gatacatcgacaccggtaataatttgagaaaata-aattaattggatgtaaacacatg |
583 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||||| |||||| |||||| |
|
|
| T |
18542278 |
gatacatcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatg |
18542221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 535 - 590
Target Start/End: Original strand, 9895147 - 9895202
Alignment:
| Q |
535 |
gacaccggtaataatttgagaaaataaattaattggatgtaaacacatgagttggt |
590 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| | |||| |||||| |||||| |
|
|
| T |
9895147 |
gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgttggt |
9895202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 545 - 590
Target Start/End: Original strand, 28322251 - 28322296
Alignment:
| Q |
545 |
ataatttgagaaaataaattaattggatgtaaacacatgagttggt |
590 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| |||||| |||||| |
|
|
| T |
28322251 |
ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggt |
28322296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 532 - 583
Target Start/End: Complemental strand, 49636888 - 49636837
Alignment:
| Q |
532 |
atcgacaccggtaataatttgagaaaataaattaattggatgtaaacacatg |
583 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
49636888 |
atcgactctggtaataatttgagaaaatgaattaattgaatgtaatcacatg |
49636837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 541 - 582
Target Start/End: Complemental strand, 5461222 - 5461181
Alignment:
| Q |
541 |
ggtaataatttgagaaaataaattaattggatgtaaacacat |
582 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
5461222 |
ggtaataatttgagataataaattaattgaatgtaatcacat |
5461181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 5526829 - 5526792
Alignment:
| Q |
538 |
accggtaataatttgagaaaataaattaattggatgta |
575 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
5526829 |
accggtaataatttgagaaaataaaataattgtatgta |
5526792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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