View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_high_12 (Length: 513)
Name: NF3804_high_12
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 5284801 - 5284307
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||| |||| |||||||||| |||| | | |
|
|
| T |
5284801 |
cttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtctctcaatttctggtattgg |
5284702 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||| || |||||||| ||||| |||| ||||| || || |
|
|
| T |
5284701 |
gtcagagccaacaataagagcagcagctccatctccaaatagtgcttgtccaacaagactgtctaagtgagtatcgctagggccacgaaatgtgacagcg |
5284602 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284601 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
5284502 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5284501 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgat |
5284402 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5284401 |
taagtgagtaatctttgactttggttggccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgt |
5284307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 5302989 - 5302495
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||||||||||||| ||||| | |
|
|
| T |
5302989 |
cttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtacggg |
5302890 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| |||| ||||| || || |
|
|
| T |
5302889 |
gtcagagccaacaataagagcagcagctccatctccaaatagtgcttgtccaacaagactgtccaagtgagtatcactagggccacgaaatgtgacagcg |
5302790 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5302789 |
gtgacctctgaacatacaaccaacacacgagcacctttgttgttctcagctagatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgtt |
5302690 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
5302689 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcagcttcgggcatgtctacaccacttgtggtgcaaacgat |
5302590 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5302589 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgt |
5302495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 5315604 - 5315110
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||||||| ||||| |||||| | |
|
|
| T |
5315604 |
cttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctctatttctggtactgg |
5315505 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||| ||||||||||||||| ||| || |||||||||||||| |||| ||||| || || |
|
|
| T |
5315504 |
gtcagagccaacaataagagcagccgctccatctccaaatagtgcttgtccaacaaggctgtctaagtgagtatcactaggaccacgaaatgtgacagcg |
5315405 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||||||||| |
|
|
| T |
5315404 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttagccaaacggagcaccgtgccacctgcaaagcacccttgtt |
5315305 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
5315304 |
ggtacatcatgtatcttttcacatatgggcgaagacctaatagtttggtgagttgataatctgctccaggcatgtcaacaccacttgtggtgcaaacgat |
5315205 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315204 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
5315110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 5310890 - 5310396
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||| | |
|
|
| T |
5310890 |
cttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgg |
5310791 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||||||| | |||||| |||||||| ||| | ||||||||||| || |||| ||||| || || |
|
|
| T |
5310790 |
gtcagaaccaacaataagagcagcagctccatctccaaacaatgcttgcccaacaaggctgtccaagtgagtatcactggggccacgaaatgtgacagcg |
5310691 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5310690 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgtt |
5310591 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5310590 |
ggtacatcatataccttttcacatatggacgaaggcccaagagttttgtgagttgataatcagctccaggcatgtctacaccacttgtggtgcaaacgat |
5310491 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5310490 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgt |
5310396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 2 - 496
Target Start/End: Original strand, 5289326 - 5289820
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||||||| | |||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||| | |
|
|
| T |
5289326 |
cttcacgaaggtggccatcaatggctccttcactatccggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgg |
5289425 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||||||| | |||||| |||||||| ||| | ||||||||||| || |||| |||| || || |
|
|
| T |
5289426 |
gtcagaaccaacaataagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcg |
5289525 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5289526 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgtt |
5289625 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5289626 |
ggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgat |
5289725 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5289726 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgt |
5289820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 496
Target Start/End: Original strand, 46706617 - 46707111
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||| | |||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||| | |
|
|
| T |
46706617 |
cttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtgaagtccaaaccatctcaaatataggtttctcaatttctggtactgg |
46706716 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
||||| |||||||||| ||| ||||||| ||||||| | |||||| |||||||| ||| | |||||||||||||| || | |||| || |||| |
|
|
| T |
46706717 |
atcagaaccaacaataagtgcagcagctctgactccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactagggccgcggaatgtgactgca |
46706816 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| || ||||||||||| |||| || |||||||| || ||||||| |
|
|
| T |
46706817 |
gtgacttcagaacaaacaaccaatacacgggcacctttgttgttctcagccaaatcgttagccaaacgaagccccgtgcctcctgcaaagcaaccttgtt |
46706916 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
46706917 |
ggtacatcatataccttttcacatatgggcgaagaccgaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgat |
46707016 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46707017 |
taagtgggtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
46707111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 1499734 - 1499239
Alignment:
| Q |
1 |
acttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499734 |
acttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgcagtccaaactaactcaaataaaggtttctcaatttcaggtacta |
1499635 |
T |
|
| Q |
101 |
ggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1499634 |
ggtcagagccaacaatgactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtaggtgagtattactaggtccacaaaatgagattgc |
1499535 |
T |
|
| Q |
201 |
agtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgt |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| || ||||||||| |||||||| || |
|
|
| T |
1499534 |
agtgatttcagaacaaacaaccaacacacgagcacctttgttattctcagctaagtccttcgccaaacgaagtactgttccacctgcataacaccctagt |
1499435 |
T |
|
| Q |
301 |
tggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| || ||||| ||||| || |||||||||||||| ||||| |||||||| | |
|
|
| T |
1499434 |
tggtacatcatgtaccttttcacatatgggttaagacctaagagttttgttagttggtaatccgcaccaggcatgtctacaccactataggtgcaaaaaa |
1499335 |
T |
|
| Q |
401 |
ttaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
|||| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
1499334 |
ttaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttccctagtctaggtatctctaccgccatcatgt |
1499239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 1492661 - 1492167
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| || ||||||||||||| |||||||||||||| ||||||| | |||||||| |||||| |||||||| ||||| | |
|
|
| T |
1492661 |
cttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtgctgtccaaatcatctcaaatataggtttttcaatttctggtaccgg |
1492562 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
||||| |||||||||| ||| || |||||||||||||||| ||||||||||||||| ||| | || |||||||| || |||| ||||| || |||| |
|
|
| T |
1492561 |
atcagacccaacaataagtgcagctgctccatctccaaatagtgcttgtccaacaagactgtccaagtgtgtatcactgggaccacgaaatgtgactgca |
1492462 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
1492461 |
gtgacttcagaacaaacaactaacacacgagcacctttgttgttctcagccaaatccttagccaaacgaagtaccgtgccacctgcaaaacaaccttgct |
1492362 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
1492361 |
ggtacatcatgtatctttttacatatggacgaagacctaagagtttagtgagttgataatcggccccaggcatgtctacaccgcttgtggtgcaaacgat |
1492262 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1492261 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacttctaccaccaccatgt |
1492167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 1478492 - 1477998
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| ||||| ||||| || | |||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||| | | |
|
|
| T |
1478492 |
cttcacgaaggtgaccatcaatggctccctcactgtctggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtattgg |
1478393 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
|||||| |||||||| | ||| ||||| ||||||||||||| ||||||||||||||| ||| | |||||||||||||| |||| |||| | |||| |
|
|
| T |
1478392 |
gtcagaaccaacaatgagtgcagcagcaccatctccaaatagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgca |
1478293 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
1478292 |
gtaacttcagaacaaacaaccaacacacgagcacctttattgttctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaaacatccttgtt |
1478193 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||| ||| |
|
|
| T |
1478192 |
ggtacatcatatacctcttcacatatggacgaagacctaagagtttggtgagttggtaatcagcgccaggcatgtctacaccacttgtggtgcaaaagat |
1478093 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
1478092 |
caagtgtgtaatctttgattttggttggccccattcttttatagctttcactgcagcctcctttcctagtctaggtacttctaccaccaccatgt |
1477998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 1505470 - 1504976
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| ||||| ||| |||||||| ||||||| || |||||||||| ||||||||| | ||||||| ||||||||||||||| |||| | | |
|
|
| T |
1505470 |
cttcacgaaggtgaccgtcaatggctccttcgctatcaggcgcgattgtttgtgcagtccaaaccatttcaaatataggtttctcaatttctggtattgg |
1505371 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
|| || |||||||| | ||| ||||||||||||||||||| |||||||||||||| ||| | |||||||||||||| || | ||||| || |||| |
|
|
| T |
1505370 |
atctgaaccaacaattagtgcagcagctccatctccaaatagagcttgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgca |
1505271 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||| |||||||||||||| ||||| | |
|
|
| T |
1505270 |
gtgacttcggaacagacaaccaacacacgggcacctttgttgttctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaaacatccttgct |
1505171 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
1505170 |
ggtacatcatgtacctcttcacatatgggcgaagacctaagagtttggtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacaat |
1505071 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1505070 |
taagtgagtaatctttgactttggctgaccccattcttttatagcttttacggcagcctcctttcctagtctaggtacctctaccaccaccatgt |
1504976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 42 - 496
Target Start/End: Complemental strand, 1482646 - 1482192
Alignment:
| Q |
42 |
agcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaat |
141 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||| | ||||||| |||||||| | ||| ||||||||||||||||| |
|
|
| T |
1482646 |
agcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtattgggtcagaaccaacaatgagtgcagcagctccatctccaaag |
1482547 |
T |
|
| Q |
142 |
attgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgcagtgacttcagaacaaacaaccaacacacgagcacctttgt |
241 |
Q |
| |
|
| ||||||||||||||| ||| | |||||||||||||| |||| |||| | |||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1482546 |
agtgcttgtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcacctttat |
1482447 |
T |
|
| Q |
242 |
tgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaagacccaa |
341 |
Q |
| |
|
| |||||||| || || |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||| || |
|
|
| T |
1482446 |
tattctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaagcatccttgttggtacatcatgtatctcttcacatatggacgaagacctaa |
1482347 |
T |
|
| Q |
342 |
gagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattctttt |
441 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||||||| ||||||||||| |||| |||||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
1482346 |
gagttttgtgagttggtaatcggcaccaggcatgtctacaccacttgtggtacaaaatattaagtgtgtaatctttgattttggttggccccattctttt |
1482247 |
T |
|
| Q |
442 |
atagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
1482246 |
atagccttcactgcagcctcctttcctagtctaggcacctctaccaccaccatgt |
1482192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 1509618 - 1509123
Alignment:
| Q |
1 |
acttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtacta |
100 |
Q |
| |
|
||||||||||| ||||| ||| || |||||||||| | |||||||||||||| ||||||||| | |||||||| || |||||||||||| ||||| |
|
|
| T |
1509618 |
acttcacgaaggtgaccgtcaatggcaccttcactatttggagcaattgtttgtgcagtccaaaccatctcaaatatagatttctcaatttctggtacag |
1509519 |
T |
|
| Q |
101 |
ggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgc |
200 |
Q |
| |
|
|||||| |||||||| | ||| ||||||||||||||||||| ||||||||||||||| ||| | |||||||||| ||| |||||||||| || ||| |
|
|
| T |
1509518 |
ggtcagtaccaacaatgagtgcagcagctccatctccaaataatgcttgtccaacaagactgtccaaatgagtatcaccagggccacaaaatgtgactgc |
1509419 |
T |
|
| Q |
201 |
agtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgt |
300 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| ||| ||| || ||||| ||||| || |||||| |||| || || |||||||||||||||| |||| |
|
|
| T |
1509418 |
aatgactttagaacaaacaaccaacacacgagcatcttggttattttcagccaaatcctttgccaaatgaagcacagtgccacctgcaaaacacctttgt |
1509319 |
T |
|
| Q |
301 |
tggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacga |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| || |||||||| |||||||||| ||||||| ||| || || |||||||||||||||| || |
|
|
| T |
1509318 |
tggtacatcatgtacctttttacatatgggtgaagacctaaaagtttggtaagttgataatgagctccagacatatcaacaccacttgtggtgcaaaaga |
1509219 |
T |
|
| Q |
401 |
ttaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
|||| || ||||||||||| ||||| || ||||||||||||||||||||||||||| |||| || ||||| |||||||||| ||| |||||||||| |
|
|
| T |
1509218 |
ttaaatgtgtaatctttgattttggctggccccattcttttatagccttcactgcaacctcttttcctagcctaggtacctttacaaccaccatgt |
1509123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 1487164 - 1486669
Alignment:
| Q |
1 |
acttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtacta |
100 |
Q |
| |
|
|||||||||||||| || | ||| ||| |||||||||| ||| |||||||||| ||||||||| | |||||| | |||||||||||||| | || |
|
|
| T |
1487164 |
acttcacgaagttggccgctaattgcttcttcactatctagagctattgtttgtgcagtccaaacaagctcaaagagaggtttctcaatttttgatatcg |
1487065 |
T |
|
| Q |
101 |
ggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaat-gagattg |
199 |
Q |
| |
|
| || ||||||||||| ||| | |||||||||| ||||||| ||||||||||||||| ||| | | ||| ||| |||| ||||||||| | ||| | |
|
|
| T |
1487064 |
gatcggagccaacaatgactacaacagctccatcaccaaataatgcttgtccaacaaggttgctcatgtcagtttcattagggccacaaaatagtgat-g |
1486966 |
T |
|
| Q |
200 |
cagtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttg |
299 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||| |||| ||||||||||| || || |||||| |||| || || || || |||||||| || ||||| |
|
|
| T |
1486965 |
tagtgacttcagaacatattaccaacacaagagcatctttattgttctcagccaagtccttggcctaacgtagaacagtgccccctgcaaagcatccttg |
1486866 |
T |
|
| Q |
300 |
ttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacg |
399 |
Q |
| |
|
|||||| ||||| |||| |||||||| |||| |||||| |||||||| |||||||| |||||||| ||||||||| ||| ||||| ||||||||| |
|
|
| T |
1486865 |
ttggtatatcatataccgtttcacatccgggcaaagacctaagagttttgtgagttggtaatcggcaccaggcatgcctataccactcatggtgcaaaat |
1486766 |
T |
|
| Q |
400 |
attaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||| || ||||| ||||| || ||| ||||||||||| |
|
|
| T |
1486765 |
attaagtgtgtaatctttgactttggttggccctattcttttatagctttcactgcagcctcatttcctagcctaggcacgtctcgcaccaccatgt |
1486669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 44129067 - 44128573
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||| | |||||||||||||| ||||||||| | |||||||| |||||||||||||| |||||| | |
|
|
| T |
44129067 |
cttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactgg |
44128968 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
|| || |||||||| | ||| ||||||||||||||||||| || ||||||||||| ||| | |||||||||||||| || | ||||| || |||| |
|
|
| T |
44128967 |
atctgaaccaacaattagtgcagcagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgca |
44128868 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| || ||||||| |
|
|
| T |
44128867 |
gtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaaccttgtt |
44128768 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44128767 |
ggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgat |
44128668 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128667 |
caagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
44128573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 44133272 - 44132778
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||| | |||||||||||||| ||||||||| | |||||||| |||||||||||||| |||||| | |
|
|
| T |
44133272 |
cttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactgg |
44133173 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
|| || |||||||| | ||| ||||||||||||||||||| || ||||||||||| ||| | |||||||||||||| || | ||||| || |||| |
|
|
| T |
44133172 |
atctgaaccaacaattagtgcagcagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgca |
44133073 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| || ||||||| |
|
|
| T |
44133072 |
gtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaaccttgtt |
44132973 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44132972 |
ggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgat |
44132873 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132872 |
caagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
44132778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 44141694 - 44141200
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||||||||| ||||| ||| || ||||||||||| | |||||||||||||| ||||||||| | |||||||| |||||||||||||| |||||| | |
|
|
| T |
44141694 |
cttcacgaaggtgaccgtcaatggccccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactgg |
44141595 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
|| || |||||||| | ||| ||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| || |||| |
|
|
| T |
44141594 |
atctgaaccaacaattagtgcagcagctccatctccaaatagtgcttgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgca |
44141495 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| || ||||||| |
|
|
| T |
44141494 |
gtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaaccttgtt |
44141395 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44141394 |
ggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgat |
44141295 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141294 |
caagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
44141200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 496
Target Start/End: Original strand, 24163420 - 24163913
Alignment:
| Q |
3 |
ttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactagg |
102 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||| | || |
|
|
| T |
24163420 |
ttcacgaagttggccacaaatagctccttcactatttggagcgattgtttgtgctgtccaaactaactcaaatagaggtttctcaatttcctgtattggg |
24163519 |
T |
|
| Q |
103 |
tcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgcag |
202 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |||| || |||||||| || ||||||||||||| |||||| | |
|
|
| T |
24163520 |
tcagagccaacaatgactgcagcagctccatctccaaatagagcttgtccaacaaggttgtctaagtgagtatcgcttggtccacaaaatgtgattgcgg |
24163619 |
T |
|
| Q |
203 |
tgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttg |
302 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24163620 |
taacttcagaacaaacaaccaacacacgagaacctttgttgttctcagccaagtccttggccaagcgaagtaccgtgccacctgcaaaacacccttgttg |
24163719 |
T |
|
| Q |
303 |
gtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgatt |
402 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||| |||||| | ||||||| ||| |
|
|
| T |
24163720 |
gtacatcatatacctttttacacatgggcgaagacctaagagttttgtgagttggtaatcggcaccaggcatatctacaccacttatagtgcaaaatatt |
24163819 |
T |
|
| Q |
403 |
aagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||| ||||||| |||||||||| |
|
|
| T |
24163820 |
aagtgtgtgatctttgactttggttggccccattcttttatagccttcacggctgcctcctttcctagtcttggtgcctctactaccaccatgt |
24163913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 2 - 470
Target Start/End: Original strand, 37863019 - 37863487
Alignment:
| Q |
2 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggtactag |
101 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||| | | | |||||||||| ||||||||| || ||||| ||||| ||||||| ||| || | | |
|
|
| T |
37863019 |
cttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacgg |
37863118 |
T |
|
| Q |
102 |
gtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatgagattgca |
201 |
Q |
| |
|
|| || |||||||| || || || || ||||||||||| | ||| || || ||||| | | || ||||||||||||||||||| || | | |||| |
|
|
| T |
37863119 |
atctgaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgca |
37863218 |
T |
|
| Q |
202 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgtt |
301 |
Q |
| |
|
|||| || |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
37863219 |
gtgatctccgaacaaaccaccaaaacacgagcgcctttgttgttttcagccaaatctttagccaaacgaagcaccgtcccaccagcaaaacaaccttgtt |
37863318 |
T |
|
| Q |
302 |
ggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgat |
401 |
Q |
| |
|
| |||||||| || | |||||||| ||||||||||||||||| || ||||| ||||| || || |||||||| || || |||||||||||||||| || |
|
|
| T |
37863319 |
gatacatcatataacgcttcacatacgggcgaagacccaagagctttgtgagctgatagtcagcaccaggcatatccacaccacttgtggtgcaaaaaat |
37863418 |
T |
|
| Q |
402 |
taagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctag |
470 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| || |||||||| ||||||||| || ||||| |
|
|
| T |
37863419 |
tagatgagtaatctttgacttaggttgaccccattccttgatagcctttgttgcagcctcttttcctag |
37863487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 211 - 496
Target Start/End: Original strand, 37859202 - 37859487
Alignment:
| Q |
211 |
gaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatca |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
37859202 |
gaacaaactaccaacacacgagcacctttgttgttttcagccaagtctttagccaaacgaagcaccgtgccaccagcaaaacaaccttgttggtacatca |
37859301 |
T |
|
| Q |
311 |
tgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagt |
410 |
Q |
| |
|
|||| | ||||||||||| ||||| |||||||| || || || ||||| ||||| || |||||||| || ||||| |||||||||| ||| | ||| || |
|
|
| T |
37859302 |
tgtaacgcttcacatatggacgaaggcccaagagctttgtcagctgatagtcggcaccgggcatgtccacgccactggtggtgcaaaagatgaggtgggt |
37859401 |
T |
|
| Q |
411 |
aatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgt |
496 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || ||||| ||| ||||| || |||||||| |||||||| || |||||||||| |
|
|
| T |
37859402 |
aatcttggacttaggttgaccccattccttgatggcctttgttgctgcctcttttcctagtcttggtacctccacaaccaccatgt |
37859487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 222 - 449
Target Start/End: Complemental strand, 39030344 - 39030117
Alignment:
| Q |
222 |
caacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatcatgtaccttttc |
321 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| ||||| ||||| || | |||| |||||||| ||||||||||||||||| || | || |
|
|
| T |
39030344 |
caacacacgggcacctttgttgttctcagccaaatctttagccaagcgaagagccatcgcaccagcaaaacaaccttgttggtacatcatataacgcttt |
39030245 |
T |
|
| Q |
322 |
acatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagtaatctttgact |
421 |
Q |
| |
|
|||||||| | ||| || ||||| || ||||| ||||| || ||||||||||| || || ||||||| ||||||| || | ||||||| | |||||| |
|
|
| T |
39030244 |
acatatggacaaaggcctaagagctttgtgagctgatagtcagctccaggcatatcgacaccacttgaagtgcaaaatatgagatgagtaaccattgact |
39030145 |
T |
|
| Q |
422 |
ttggttgaccccattcttttatagcctt |
449 |
Q |
| |
|
| |||||||||||||| || |||||||| |
|
|
| T |
39030144 |
taggttgaccccattcattgatagcctt |
39030117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 226 - 437
Target Start/End: Complemental strand, 35251080 - 35250869
Alignment:
| Q |
226 |
acacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatcatgtaccttttcacat |
325 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||| || | |||||| |
|
|
| T |
35251080 |
acacgagcacctttattgttctcagccaaatctttagccaaacgaagaaccataccaccagcgaaacacccttgttggtacatcatataacgtttcaccg |
35250981 |
T |
|
| Q |
326 |
atgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagtaatctttgactttgg |
425 |
Q |
| |
|
| || ||||| || | | ||| ||||| |||||||| || |||||||| || || ||||| || |||||| || | |||||| ||||| |||||||| |
|
|
| T |
35250980 |
acggacgaagtcctagcaattttgtgagctgataatcagcaccaggcatatccacaccactagtaatgcaaaatatgaggtgagtgatcttggactttgg |
35250881 |
T |
|
| Q |
426 |
ttgaccccattc |
437 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35250880 |
ttgaccccattc |
35250869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 35251309 - 35251216
Alignment:
| Q |
4 |
tcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttcaggta |
97 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||| | |||||||||| |||||| ||| |||||| |||||| |||||| ||||||| |
|
|
| T |
35251309 |
tcacgaaggtgaccatcaatagctccttgactatcaggaaggattgtttgtgcagtccactctagctcaaacaaaggtctctcaacctcaggta |
35251216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University