View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_14 (Length: 476)
Name: NF3804_high_14
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 5810147 - 5810601
Alignment:
| Q |
1 |
aatatttgaaaagcaagaggagatataaacaactagagggaaaataagtaaaattccaaaacaaagtataaagttggcaaagggtgtaagtaagaaaatt |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5810147 |
aatatttaaaaagcaagaggagatataaacaacgagagggaaaataagtaaaattccaaaacaaagtacaaagttggcaaagggtgtaagtaagaaaatt |
5810246 |
T |
|
| Q |
101 |
ggatgtttcattttgttagacaaccattattcttcaaatcaaacatggaagtagttttatgttgtccagtaagtctttcattttccaacaaattaaaagc |
200 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5810247 |
ggatgtttcattttgttagacaaccaat---cttcaaatcaaacatggaagtagttttatgttgtccagtaagtctttcattttccaaaaaattaaaagc |
5810343 |
T |
|
| Q |
201 |
acctaaagcaacacataaaatatnnnnnnnnnntgtgaaaagttgaaaacaaacaacaagttgtgattttctacagaaattatagacaaaataaacatta |
300 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810344 |
acctagagcaacacataaaatataaaaaaaa--tgtgaaaagttgaaaacaaacaacaagttgtgattttctacagaaattatagacaaaataaacatta |
5810441 |
T |
|
| Q |
301 |
ttcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaataatagaatcatagctttccattcattaaccataaagaaacatactgta |
400 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5810442 |
ttcagaacttcaatatattattgcaacattggctactaaaaaaggatgaaataatagaatcatagctttcaattcattaaccataaagaaacatactgta |
5810541 |
T |
|
| Q |
401 |
tcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttc |
460 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5810542 |
tcagggcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttc |
5810601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 256 - 460
Target Start/End: Complemental strand, 38604444 - 38604240
Alignment:
| Q |
256 |
acaagttgtgattttctac-agaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaat |
352 |
Q |
| |
|
||||||||||| ||||||| ||||| ||| ||| |||| || ||||||||||| | ||||| | |||| ||| |||||||||| |||||||||||||| |
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| T |
38604444 |
acaagttgtgactttctactagaaaatatgaagataaaacaagcattattcagagcatcaatgaactattgcaaaattggctactcaaaaaggatgaaat |
38604345 |
T |
|
| Q |
353 |
aatagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcgg |
452 |
Q |
| |
|
|||| ||||||||||||| ||| | | ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
38604344 |
aatataatcatagctttcaatt---tcatcataaggaaacatactgtatcctggcgcatgaacagactattccatgctctggtatctcctttagcttcag |
38604248 |
T |
|
| Q |
453 |
ctactttc |
460 |
Q |
| |
|
|| ||||| |
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|
| T |
38604247 |
ctgctttc |
38604240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 256 - 460
Target Start/End: Original strand, 37740501 - 37740704
Alignment:
| Q |
256 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
353 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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|
| T |
37740501 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37740600 |
T |
|
| Q |
354 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
453 |
Q |
| |
|
||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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|
| T |
37740601 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37740697 |
T |
|
| Q |
454 |
tactttc |
460 |
Q |
| |
|
| ||||| |
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|
| T |
37740698 |
tgctttc |
37740704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 256 - 460
Target Start/End: Original strand, 37756712 - 37756915
Alignment:
| Q |
256 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
353 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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|
| T |
37756712 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37756811 |
T |
|
| Q |
354 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
453 |
Q |
| |
|
||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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|
| T |
37756812 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37756908 |
T |
|
| Q |
454 |
tactttc |
460 |
Q |
| |
|
| ||||| |
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|
| T |
37756909 |
tgctttc |
37756915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 256 - 460
Target Start/End: Original strand, 37762460 - 37762663
Alignment:
| Q |
256 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
353 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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|
| T |
37762460 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37762559 |
T |
|
| Q |
354 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
453 |
Q |
| |
|
||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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|
| T |
37762560 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37762656 |
T |
|
| Q |
454 |
tactttc |
460 |
Q |
| |
|
| ||||| |
|
|
| T |
37762657 |
tgctttc |
37762663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 38605264 - 38605179
Alignment:
| Q |
1 |
aatatttgaaaagcaagaggagatataaacaactagagggaaaataagtaaaattccaaaacaaagtataa-agttggcaaagggtgt |
87 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| | ||||||||||| ||||||||||||||| || |||||||||||||||| |
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|
| T |
38605264 |
aatatttgaaaagcaagaggag--ataaacaaatagacgaaaaataagtaatcttccaaaacaaagtacaacagttggcaaagggtgt |
38605179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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