View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_high_15 (Length: 466)
Name: NF3804_high_15
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 28024601 - 28024174
Alignment:
| Q |
17 |
cactcattacattgatttcaatcagaatctcaagttttaccttaattgttagtgaaaaagttaattattattgatcaaaacttatttttgcacttgcaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28024601 |
cactcattacattgatttcaatcagaatctcaagttttaccttaattgttagtgaaaaagttaattattattgatcaaaacttatttttgcacttgcaga |
28024502 |
T |
|
| Q |
117 |
tacgaaagcgtttgttagcgtaaagttgaacaaagacggtgcaatctgaattctatattgacatctcttgtggaacttgatcatagcaaatgacactcat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
28024501 |
tacgaaagcgtttgttagcgtaaagttgaacaaagacggtgcaatctgaattctatattgacatctcttgtggaacttgatcacagcaaatgacaatcat |
28024402 |
T |
|
| Q |
217 |
tttaactctatctttcattttgttataaggttatgtgttgcatgtctgcaatgttttgtattgtttttaaaattagatgagatacataataattattaaa |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28024401 |
tttaactttatctttcattttgttataaggttatgtgttgcatgtctgcaatgttttgtattgtttttaaaattagatgagatacataataattattaaa |
28024302 |
T |
|
| Q |
317 |
aataaactgcattttaggtttgatatcnnnnnnngaataagttcaactatatttcaattttggcataatttcaattttaggtatacctttcaaatgagtt |
416 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28024301 |
aataaactgcattttatgtttgatatcaacaaaagaataagttcaactgtatttcaattttggcataatttcaatcttaggtatacctttcaaatgagtt |
28024202 |
T |
|
| Q |
417 |
tgttttattaactctattcttgaaacta |
444 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28024201 |
tgttttattaactctattcttgaaacta |
28024174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University