View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_16 (Length: 455)
Name: NF3804_high_16
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 33 - 444
Target Start/End: Complemental strand, 5022352 - 5021941
Alignment:
| Q |
33 |
tatacttcataagcattccacatttccaaagcaattttcttacttgaactcggtttttcttcagagtccacttcaagtttcagtttctttgatatgtatc |
132 |
Q |
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| T |
5022352 |
tatacttcataagcattccacatttccaaagcaattttcttacttgaactcggtttttcttcagagtccacttcaagtttccgtttctttgatatgtatc |
5022253 |
T |
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| Q |
133 |
gacttttgtcatgtagcaattcacgatctacttcagcaattatttgttcatcaatgtcaatgcccataaggaagttgtgcaagatacaacaagcactgat |
232 |
Q |
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| T |
5022252 |
gacttttgtcatgtagcaattcacgatctacttcagcaattatttgttcatcaatgtcaatgcccataaggaagttgtgcaagatacaacaagcactgat |
5022153 |
T |
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| Q |
233 |
tatacgtgtcatggttcgaattgaaaaatatgattcattgtcaccagttgtaatcggaaatcttttcttgagaactccaaaagctccatcaatcacattt |
332 |
Q |
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| T |
5022152 |
tatacgtgtcatggttcgaattgaaaaatatgattcattgtcaccagttgtaatcggaaatcttttcttgagaactccaaaagctccatcaatcacattt |
5022053 |
T |
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| Q |
333 |
tgaagtaaagcatgacgaaatttgaatagttcttgataattttgaggtccctgagttgaatactgcttcaagcaataacaaacacctctatatggtgtca |
432 |
Q |
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| T |
5022052 |
tgaagtaaagcatgacgaaatttgaatagttcttgataattttgaggtccctgagttgaatactgcttcaagcaataacagacacctctatatggtgtca |
5021953 |
T |
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| Q |
433 |
gcaccacaggtt |
444 |
Q |
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| T |
5021952 |
gcaccccaggtt |
5021941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 5019511 - 5019430
Alignment:
| Q |
157 |
gatctacttcagcaattatttgttcatcaatgtcaatgcccataaggaagttgtgcaagatacaacaagcactgattatacg |
238 |
Q |
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| T |
5019511 |
gatctacttcagcaatcatttgttcgtcaatgtcaacttccataagaaagttatgcaaaacacaacaagcaatgattatacg |
5019430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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