View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_17 (Length: 455)
Name: NF3804_high_17
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 23144454 - 23144033
Alignment:
| Q |
16 |
tcataggccataaatgtgatttcatgatgtcatgaaattaacatatcttacttggtagcagttataaacatgatcatttgtaattacaatgtacatgaac |
115 |
Q |
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| T |
23144454 |
tcataggccataaatgtgatttcatgatgtcatgaaattaacatatcttacttggtagcagttataaacatgatcatttgtaattacaatgaacatgaac |
23144355 |
T |
|
| Q |
116 |
acaaaatcacaacgagcagaacnnnnnnnngtaacaaagagtccttacaaaatacatgatcgttcattcaactggtgtatttcatcgaacacctcaaaag |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23144354 |
acaaaatcacaacgagcagaacaaaaaaaagtaacaaagagtccttacaaaatacatgatcgttcattcaactggtgtatttcatcgaacacctcaaaag |
23144255 |
T |
|
| Q |
216 |
caaatttgtgaaccaaaaatcagaggaatattggattatcgttgcatcatgcacgatatcagagggagtatcgttgcaacatgatacttatacattgacg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23144254 |
caaatttgtgaaccaaaaatcagaggaatattggattatcgttgcatcatgcacgatatcagaggaagtatcgttgcaacatgatacttatacattgacg |
23144155 |
T |
|
| Q |
316 |
ttgataataatttaaagagttgacataatttaatgtaatcatatttgttagtgttgtaactgcaatgaatgtcggataacgaacacaccttcaatcaaaa |
415 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||| | || |
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| T |
23144154 |
ttgataataatttaaagagttgacataattcaatgtaatcatatgtgttagtgttgtaactgcaatgaatatcgaacaacgaacacaccttcaataagaa |
23144055 |
T |
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| Q |
416 |
gtataggtgttgcagagatttt |
437 |
Q |
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||||||||| |||||||||||| |
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| T |
23144054 |
gtataggtgctgcagagatttt |
23144033 |
T |
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