View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_high_2 (Length: 907)
Name: NF3804_high_2
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 406 - 892
Target Start/End: Complemental strand, 42761156 - 42760670
Alignment:
| Q |
406 |
agcatcaccaatctccccgcatttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaacc |
505 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42761156 |
agcatcaccaatctcaccgcatttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaacc |
42761057 |
T |
|
| Q |
506 |
gattttcctaccaaaaccttacacgtaccggaacatgctttaatcacagaagggtaagtgtaactatcaggcacagccccttccgctttcatgcgaataa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42761056 |
gattttcctaccaaaaccttacacgtaccggaacatgctttaatcacagaagggtaagtgtaactatcaggcacagccccttccgctttcatgcgaataa |
42760957 |
T |
|
| Q |
606 |
aagcggaaattgtatcagaaaagaagctactttgacaatgtgttctaatgaaagtgttccagaggaatgtagagggattgagaacgcggttgaaaaccgc |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42760956 |
aagcggaaattgtatcagaaaagaagctactttgacaatgtgttctaatgaaagtgttccagaggaatgtagagggattgagaacgcggttgaaaaccgc |
42760857 |
T |
|
| Q |
706 |
tgtggaatatgagagagtggaaatggaaagtgtgttggcgagggaaatgaaattggaaatgagaacttggtcttgttcaaggcctctttgaatgatggaa |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
42760856 |
tgtggaatatgagagagtggaaatggaaagtgtgttggcgagtgaaatgaaattggaaatgaggaactggtcttgttcaaggcctctttgaatgatggaa |
42760757 |
T |
|
| Q |
806 |
gcgtgaacttgttgaagatgttggattctcttgcaagctttgagaagggttgctatgcatgcagatgaacgagtagaggaacaatgt |
892 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42760756 |
gcgtgaacttgttgaagatgttggattctcttgcaagctttgagaagggttgctatgcatgcagatgaacgagtagaggaacaatgt |
42760670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 406 - 892
Target Start/End: Complemental strand, 42803558 - 42803072
Alignment:
| Q |
406 |
agcatcaccaatctccccgcatttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaacc |
505 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
42803558 |
agcatcactaatctgtccacatttaccatacatatcaatcaaagtagtacccataaacaaatcctgatccaaaccacacctaaacaccgacccgtgaacc |
42803459 |
T |
|
| Q |
506 |
gattttcctaccaaaaccttacacgtaccggaacatgctttaatcacagaagggtaagtgtaactatcaggcacagccccttccgctttcatgcgaataa |
605 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42803458 |
gactttcctaccaaaaccttacacgtaccagaacatgctttaatcacagaagggtaagtgtaactatcaggcacagccccttccgctttcatgcgaataa |
42803359 |
T |
|
| Q |
606 |
aagcggaaattgtatcagaaaagaagctactttgacaatgtgttctaatgaaagtgttccagaggaatgtagagggattgagaacgcggttgaaaaccgc |
705 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42803358 |
aggcggaaattgtatcagaaaagaagctactttgacaatgggttctaatgaaagtgttccagaggaatgtagagggattgagaacgcggttgaaaaccgc |
42803259 |
T |
|
| Q |
706 |
tgtggaatatgagagagtggaaatggaaagtgtgttggcgagggaaatgaaattggaaatgagaacttggtcttgttcaaggcctctttgaatgatggaa |
805 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42803258 |
tgtggaatatgagcgagtggaaatggaaagtgtgttggcgagggaaatgaaattggaaatgagaacttggtcttgttcaaggcctctttgaatgatggaa |
42803159 |
T |
|
| Q |
806 |
gcgtgaacttgttgaagatgttggattctcttgcaagctttgagaagggttgctatgcatgcagatgaacgagtagaggaacaatgt |
892 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
42803158 |
gcgtgaacttgttgaagatgttggattctcttgcaagctttgagaagggttgttatgcatgcagatgaacgagtagcggaacaatgt |
42803072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 42805231 - 42804853
Alignment:
| Q |
11 |
acatcatcaaacttctagtagatgtattaaaaatataaatatataatgaatggtaagggcatcaacacaaatccttggcggttgacatacacaacatttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42805231 |
acatcatcaaacttctagtagatgtattaaaaatataaatatataatgaatggtaagggcatcaacacaaatccttggtggttgacatacacaacatttt |
42805132 |
T |
|
| Q |
111 |
caatgtaaattgcaaaaagctcttaatatcctgtggtccaagaaatactgaaaaattataaacatatgcgttgtgaataaatagtgctattcatgacagg |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42805131 |
caatgtaaattgcaaaaagctcttgatatcctgtggtccaagaaatactgaaaaattataaacaaatgcgttgtgaataaatagtgctattcatgacagg |
42805032 |
T |
|
| Q |
211 |
gcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42805031 |
gcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatccaaagtaacatagaagaaagcataacttaacttc |
42804932 |
T |
|
| Q |
311 |
aatgagaatggatcctctcatgttctttcatgttaaaattatatgcgacagttagtgaaaaacggcaataaacttatat |
389 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
42804931 |
aatgagaatagatcctctcatgttctttcatgttgaaattatatgcgacagttagtgaaaaatggcaataaacttatat |
42804853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 42762821 - 42762451
Alignment:
| Q |
11 |
acatcatcaaacttctagtagatgtattaaaaatataaatatataatgaatggtaagggcatcaacacaaatccttggcggttgacatacacaacatttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
42762821 |
acatcatcaaacttctagtagatgtattaaaaatataa--------taaatggtaagggcatcaacacaaatccttggcagttgacatacacagcatttt |
42762730 |
T |
|
| Q |
111 |
caatgtaaattgcaaaaagctcttaatatcctgtggtccaagaaatactgaaaaattataaacatatgcgttgtgaataaatagtgctattcatgacagg |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
42762729 |
cattgtaaattgcaaaaagctcttaatatcctgtggtccaagaaatactgaaaaattataaacaaatacgttgtgaataaatagtgctattcatgacagg |
42762630 |
T |
|
| Q |
211 |
gcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatccaaagtaacatagatgaaagcataacttaacttc |
310 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
42762629 |
gcatcttatgaaggcgggataggttcaacccctaaaaacgacataaatgaaattaaaacttcaatccaaagtaacatagaagaaagcataaattcacttc |
42762530 |
T |
|
| Q |
311 |
aatgagaatggatcctctcatgttctttcatgttaaaattatatgcgacagttagtgaaaaacggcaataaacttatat |
389 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42762529 |
aatgagaatggatcctctcatgctctttcatgttaaaattatatgtgacagttagtgaaaaacggcaataaacttatat |
42762451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 198 - 385
Target Start/End: Complemental strand, 33048988 - 33048811
Alignment:
| Q |
198 |
tattcatgacagggcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatccaaagtaacatagatgaaagc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
33048988 |
tattcatgacagggcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatcctaagtaacatagaagaaagc |
33048889 |
T |
|
| Q |
298 |
ataacttaacttcaatgagaatggatcctctcatgttctttcatgttaaaattatatgcgacagttagtgaaaaacggcaataaactt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33048888 |
ataacttaacttcaatgagaatggatcctctca----------tgttaaaattatatgcgacagttagtgaaaaacggcaataaactt |
33048811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 425 - 523
Target Start/End: Original strand, 6170723 - 6170821
Alignment:
| Q |
425 |
catttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaaccgattttcctaccaaaacc |
523 |
Q |
| |
|
|||||||||||||||| || |||| |||| |||||||||| ||||||||||||||||||| | || |||||| |||||||| ||||||| |||| |||| |
|
|
| T |
6170723 |
catttaccatacatataaatcaaactagttcccacaaacacatcctgatccaaaccacacttcaaaaccgactcatgaaccaattttccaaccataacc |
6170821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 523
Target Start/End: Original strand, 6250085 - 6250183
Alignment:
| Q |
425 |
catttaccatacatatcaaccaaagtagtacccacaaacaaatcctgatccaaaccacacctaaacaccgacccatgaaccgattttcctaccaaaacc |
523 |
Q |
| |
|
|||||||||||||||| || |||| |||| |||||||||| ||||||||| ||||||||| | || |||||| |||||||| ||||||| |||| |||| |
|
|
| T |
6250085 |
catttaccatacatataaatcaaactagttcccacaaacacatcctgatcgaaaccacacttcaaaaccgactcatgaaccaattttccaaccataacc |
6250183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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