View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_21 (Length: 442)
Name: NF3804_high_21
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 16384969 - 16384802
Alignment:
| Q |
39 |
caaaacttgtatggtcaatagaccaataaaagaagagaaaagagtgtagaggttgagagggtatctcaaagaaccaatttgaaaaatgtctcacaatttt |
138 |
Q |
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| T |
16384969 |
caaaacttgtatggttaatagagcaataaaagaagagaaaagagtgtagaggttgagagggtatctcaaagaaccaagttgaaaaatgtgtcacaatttg |
16384870 |
T |
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| Q |
139 |
taggtttcgatttcgtacactggcttactagattgtgttggtggtacatgtttgtgcactttctgtctat |
208 |
Q |
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| T |
16384869 |
taggtttcgatttcgt--actggcttactagattgtgttggtggtacatgtttgtgcactttctgtctat |
16384802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 16384718 - 16384612
Alignment:
| Q |
293 |
aatctatcttgggttagcaggtggtcctcctcctccatttgctcccattttaccttaaaaggacacatatttaatataaaaaaataattttaatcaatgt |
392 |
Q |
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| T |
16384718 |
aatctatcttgggttagcaggtggtcctcctcctccatttgctcccattttaccttaaaaggacacatatttaatataa-aaaataattttaatcaatgt |
16384620 |
T |
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| Q |
393 |
caatgtaa |
400 |
Q |
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| T |
16384619 |
caatgtaa |
16384612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 26330524 - 26330435
Alignment:
| Q |
19 |
taaagtccgaagaggctttccaaaacttgtatggtcaa-tagaccaataaaagaagagaaaagagtgtagaggttgagagggtatctcaa |
107 |
Q |
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| T |
26330524 |
taaagtctgaagaggttgtccaaaacttgtaagatcaaataaaccgagaaaagaagagagaagagtgtagtatttgagagggtatctcaa |
26330435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 5487433 - 5487520
Alignment:
| Q |
27 |
gaagaggctttccaaaacttgtatggtcaa-tagaccaataaaagaagagaaaagagtgtagaggttgagagggtatctcaaagaacca |
114 |
Q |
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| T |
5487433 |
gaagaggttgtccaaaactcgtattgtcaagtaggccaagaaaagaagagaaaa-agtgcagaagttgagtgggtatctcaaagcacca |
5487520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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