View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_22 (Length: 438)
Name: NF3804_high_22
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 41 - 427
Target Start/End: Complemental strand, 40222726 - 40222340
Alignment:
| Q |
41 |
ggtaaatctaatttttgttgtattggcttgtttttgctctcttaggttccaagaaattgtaccgctaaatgctgggaacgtgcttgggtcggagaacagt |
140 |
Q |
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| T |
40222726 |
ggtaaatctaatttttgttgtattggcttgtttttgatctcttaggttccaagaaattgtaccactaaatgctgggaacgtgcttgggtcggagaacagt |
40222627 |
T |
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| Q |
141 |
ggccccgcagcaaagtggctagcccttattcatcaagctctaaacacctcaaacaatgaaatcccaaatcaaaagcaacgctttagtctagtagcaagca |
240 |
Q |
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| T |
40222626 |
ggccccgcagcaaagtggctagcccttattcatcaagctctaaacacctcaaacaatgaaatcccaaatcaaaagaaacgctttagcctagtagcaagca |
40222527 |
T |
|
| Q |
241 |
agcaaatggttggtatcttcttgtgcgtgtgggtacgcgccgattatcgcaaccacgttggcaatttaaaagtgtctcgcgttggtaccggcatcatggg |
340 |
Q |
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| T |
40222526 |
agcaaatggtcggtatcttcttgtgcgtgtgggtacgcgccgattatcgcaaccacgttggcaatttaaaagtgtctcgcgttggtaccggcatcatggg |
40222427 |
T |
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| Q |
341 |
ctaccttggaaataaggttcgttaaaagtcaaatgatctgacgattatgattgattgatagtataaaataaattacacgatgatgtc |
427 |
Q |
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| T |
40222426 |
ctaccttggaaataaggttcgttaaaagtcaaatgatctgacgattatgattgattgatagtataaaagaaattacacgttgatgtc |
40222340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 39338380 - 39338417
Alignment:
| Q |
372 |
aatgatctgacgattatgattgattgatagtataaaat |
409 |
Q |
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| T |
39338380 |
aatgatttgacgattataattgattgatagtataaaat |
39338417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 4076069 - 4076111
Alignment:
| Q |
372 |
aatgatctgacgattatgattgattgatagtataaaataaatt |
414 |
Q |
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| T |
4076069 |
aatgatctaacgattatgattgattgatagtgtaaaaaaaatt |
4076111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 36886051 - 36886013
Alignment:
| Q |
372 |
aatgatctgacgattatgattgattgatagtataaaata |
410 |
Q |
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| T |
36886051 |
aatgacctgacgattatgattgattgatagtgtaaaata |
36886013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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