View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_high_23 (Length: 420)

Name: NF3804_high_23
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_high_23
NF3804_high_23
[»] chr4 (14 HSPs)
chr4 (1-406)||(33997853-33998258)
chr4 (305-406)||(8747691-8747792)
chr4 (305-363)||(8749046-8749104)
chr4 (305-363)||(8896953-8897011)
chr4 (303-363)||(48157678-48157738)
chr4 (305-361)||(40168639-40168695)
chr4 (298-361)||(9397437-9397500)
chr4 (306-361)||(40169781-40169836)
chr4 (305-361)||(1961172-1961228)
chr4 (304-360)||(9178634-9178690)
chr4 (301-361)||(25011731-25011791)
chr4 (305-361)||(31435854-31435909)
chr4 (305-361)||(55780387-55780443)
chr4 (305-361)||(55844567-55844623)
[»] chr2 (10 HSPs)
chr2 (303-406)||(27553764-27553867)
chr2 (305-406)||(27552452-27552553)
chr2 (305-363)||(12812836-12812894)
chr2 (303-361)||(28851674-28851732)
chr2 (305-406)||(10851913-10852013)
chr2 (304-352)||(24192244-24192291)
chr2 (305-361)||(45413479-45413535)
chr2 (303-361)||(1389231-1389289)
chr2 (376-406)||(28617993-28618023)
chr2 (305-406)||(45412335-45412436)
[»] chr3 (11 HSPs)
chr3 (303-406)||(10584039-10584142)
chr3 (303-406)||(32829738-32829841)
chr3 (303-361)||(26722531-26722589)
chr3 (305-361)||(26723906-26723962)
chr3 (303-363)||(51219460-51219520)
chr3 (305-406)||(51220560-51220660)
chr3 (305-406)||(32831047-32831148)
chr3 (305-363)||(53157176-53157233)
chr3 (305-361)||(21326320-21326376)
chr3 (305-361)||(40630627-40630683)
chr3 (305-361)||(54539500-54539556)
[»] chr7 (5 HSPs)
chr7 (305-406)||(9805383-9805484)
chr7 (303-406)||(35080281-35080384)
chr7 (305-406)||(35081558-35081659)
chr7 (305-354)||(23621990-23622039)
chr7 (305-361)||(12961984-12962040)
[»] chr1 (13 HSPs)
chr1 (42-155)||(6230075-6230188)
chr1 (303-406)||(46525799-46525902)
chr1 (305-363)||(46312065-46312123)
chr1 (305-406)||(3000170-3000271)
chr1 (307-406)||(46524542-46524641)
chr1 (305-352)||(14512669-14512716)
chr1 (303-406)||(2999489-2999591)
chr1 (305-406)||(14204837-14204939)
chr1 (305-363)||(50379972-50380030)
chr1 (300-361)||(43706901-43706962)
chr1 (305-361)||(2425471-2425527)
chr1 (305-361)||(28920899-28920955)
chr1 (305-361)||(46313276-46313332)
[»] chr6 (8 HSPs)
chr6 (303-363)||(22417656-22417716)
chr6 (300-406)||(22418894-22419000)
chr6 (297-361)||(6978139-6978203)
chr6 (305-361)||(20409067-20409123)
chr6 (305-360)||(12181595-12181650)
chr6 (303-353)||(10120173-10120223)
chr6 (324-361)||(15888990-15889027)
chr6 (305-361)||(20410219-20410275)
[»] chr5 (11 HSPs)
chr5 (303-406)||(5504093-5504196)
chr5 (305-363)||(124529-124587)
chr5 (305-358)||(3597323-3597376)
chr5 (305-406)||(5502918-5503018)
chr5 (303-361)||(3598924-3598982)
chr5 (305-406)||(121349-121450)
chr5 (304-363)||(14189663-14189722)
chr5 (305-363)||(14190487-14190545)
chr5 (303-361)||(17414542-17414600)
chr5 (303-357)||(17415695-17415749)
chr5 (305-361)||(8061856-8061912)
[»] chr8 (4 HSPs)
chr8 (305-406)||(13882655-13882756)
chr8 (305-353)||(13883878-13883926)
chr8 (305-361)||(38612219-38612275)
chr8 (305-361)||(38613419-38613475)
[»] scaffold1875 (1 HSPs)
scaffold1875 (305-361)||(756-812)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 33998258 - 33997853
Alignment:
Q  1 ttcctttaaatgaagctttgatgaggtttctctattgtgacttgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998258 ttcctttaaatgaagctttgatgaggtttctctattgtgacttgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctc 33998159  T
Q  101 tttccaagctccatacttataccatacggatcccataactatgttccttcaacacaaaagatttcaagttcataagggtgatgatatgttgttgccttca 200  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998158 ttttcaagctccacacttataccatacggatcccataactatgttccttcaacacaaaagatttcaagttcataagggtgatgatatgttgttgccttca 33998059  T
Q  201 gaaatcagaacctgcattattcacagcactctttctcaagagaatgcttgataatcactttatagctctttctgtcattgcccaaaactttcgcaaatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998058 gaaatcagaacctgcattattcacagcactctttctcaagagaatgcttgataatcactttatagctctttctgtcattgcccaaaactttcgcaaatta 33997959  T
Q  301 tcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||||||    
T  33997958 tcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgaccccctaataaaaaaaatgaaaattttgccccctaagatttagccc 33997859  T
Q  401 ctttgc 406  Q
    ||||||    
T  33997858 ctttgc 33997853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 8747691 - 8747792
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||        |||| ||||||||||||| | ||||||||||||    
T  8747691 ggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 8747790  T
Q  405 gc 406  Q
    ||    
T  8747791 gc 8747792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 8749104 - 8749046
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  8749104 ggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 8897011 - 8896953
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    |||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||||    
T  8897011 ggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 48157738 - 48157678
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    ||||||||||| ||||||||||||||||| |||  ||| | ||||||||||||||||||||    
T  48157738 ttggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggccccctaat 48157678  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 40168639 - 40168695
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  40168639 ggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggcccccta 40168695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 9397500 - 9397437
Alignment:
Q  298 ttatcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    |||| ||||||||||| || |||| |||||||||||||   ||||||| |||||||||||||||    
T  9397500 ttattttggctaaactgcacttttcaccccctaagttttaaaatgttgggattttggcccccta 9397437  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 40169836 - 40169781
Alignment:
Q  306 gctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    |||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  40169836 gctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 40169781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 1961228 - 1961172
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||| | || |||| ||||||||||||||| || ||||| ||||||||||||||    
T  1961228 ggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 1961172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 9178634 - 9178690
Alignment:
Q  304 tggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccct 360  Q
    |||||||||| ||||||||||| ||||| |||  ||| | |||||||||||||||||    
T  9178634 tggctaaactgcagttttgacctcctaactttcataaaggtgcgattttggccccct 9178690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 25011731 - 25011791
Alignment:
Q  301 tcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||||||| || ||||   |||||||||||   |||||||||||||||||||||||    
T  25011731 tcttggctaaactccacttttcgtcccctaagtttcaaaatgttgcgattttggcccccta 25011791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 31435909 - 31435854
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    |||||||||||||||||| |||  || |||||| ||||||||||||||| |||||||    
T  31435909 ggctaaactacagttttggccct-tatgtttgccaatgttgcgattttgacccccta 31435854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 55780387 - 55780443
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| || ||||  |||| ||||||| | |||||||||||||||||||||||    
T  55780387 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 55844567 - 55844623
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| || ||||  |||| ||||||| | |||||||||||||||||||||||    
T  55844567 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55844623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 406
Target Start/End: Complemental strand, 27553867 - 27553764
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 402  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||    
T  27553867 ttggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggcctcctaataaaaaaaatgaaaattttgccccctaagatttagcccct 27553768  T
Q  403 ttgc 406  Q
    ||||    
T  27553767 ttgc 27553764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 27552452 - 27552553
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||        ||||||||| ||||||||||||||| |||||||    
T  27552452 ggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaataaaaaaaatgaaaatttagccccctaagatttaaccccttt 27552551  T
Q  405 gc 406  Q
    ||    
T  27552552 gc 27552553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 12812836 - 12812894
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  12812836 ggctaagctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 28851732 - 28851674
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||||| ||||||||||||||||| |||   ||||||||||||||| |||||||    
T  28851732 ttggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgacccccta 28851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 10851913 - 10852013
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||  |||||| ||        |||||||||| ||||||| | ||||||||||||    
T  10851913 ggctaaactacagttttgaccccctaactttatcaatgttgcgattttaaccccct-attaaaaaaatgaaaattttaccccctatgttttagccccttt 10852011  T
Q  405 gc 406  Q
    ||    
T  10852012 gc 10852013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 24192244 - 24192291
Alignment:
Q  304 tggctaaactacagttttgaccccctaagtttgctaatgttgcgatttt 352  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  24192244 tggctaaactacagttttggcccca-aagtttgctaatgttgcgatttt 24192291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 45413535 - 45413479
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  45413535 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 45413479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 1389231 - 1389289
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  1389231 ttggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 1389289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Original strand, 28617993 - 28618023
Alignment:
Q  376 aattttgccccctaagatttagcccctttgc 406  Q
    |||||||||||||||||||||||||||||||    
T  28617993 aattttgccccctaagatttagcccctttgc 28618023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 45412335 - 45412436
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||| ||||||||||||||||| |||   |||| |||||||||| ||||||| |        |||||||||   |||||| ||||||||||||||    
T  45412335 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctattaaaaaaaatgaaaatttaaacccctatgatttagccccttt 45412434  T
Q  405 gc 406  Q
    ||    
T  45412435 gc 45412436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 303 - 406
Target Start/End: Complemental strand, 10584142 - 10584039
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 402  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||        | ||||||| |||||||||||||||||||||    
T  10584142 ttggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaataaaaaaaattaaaatttggccccctaagatttagcccct 10584043  T
Q  403 ttgc 406  Q
    ||||    
T  10584042 ttgc 10584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 32829738 - 32829841
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 402  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||        |||| ||||||||||||| | ||||||||||    
T  32829738 ttggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 32829837  T
Q  403 ttgc 406  Q
    ||||    
T  32829838 ttgc 32829841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 26722531 - 26722589
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  26722531 ttggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 26723962 - 26723906
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  26723962 ggctaaactacagttttggccccctaagtttactaatgttgcaattttggcccccta 26723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 51219460 - 51219520
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  51219460 ttggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 51220660 - 51220560
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||        |||| ||||||||||||| | ||||||||||||    
T  51220660 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat-aaaaaaatgaatattttgccccctatgttttagccccttt 51220562  T
Q  405 gc 406  Q
    ||    
T  51220561 gc 51220560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 32831148 - 32831047
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||| |||||        ||||  |||||||||||| | ||||||||||||    
T  32831148 ggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttgaccctctaataaaaaaaatgaattttttgccccctatgttttagccccttt 32831049  T
Q  405 gc 406  Q
    ||    
T  32831048 gc 32831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 53157233 - 53157176
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||    
T  53157233 ggctaaactacagttttgacccc-taagtttgccaatgttgcgattctggccctctaat 53157176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 21326320 - 21326376
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    |||||||||||| |||||||||| ||||||| | ||| |||| ||||||| ||||||    
T  21326320 ggctaaactacacttttgaccccttaagtttaccaatattgcaattttggtccccta 21326376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 40630683 - 40630627
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||| | || |||| ||||||||||||||| || ||||| ||||||||||||||    
T  40630683 ggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 40630627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 54539556 - 54539500
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||| ||||| ||| ||||  |||| ||||||||||||||||||    
T  54539556 ggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggcccccta 54539500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 9805484 - 9805383
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||        ||||||||| ||||||| |||||||||||||||    
T  9805484 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggccctctaatagaaaaaatgaaaatttggccccctgagatttagccccttt 9805385  T
Q  405 gc 406  Q
    ||    
T  9805384 gc 9805383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 35080281 - 35080384
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 402  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||        |||| ||||||||||||| | ||||||||||    
T  35080281 ttggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaataaaaaaaatgaatattttgccccctatgttttagcccct 35080380  T
Q  403 ttgc 406  Q
    ||||    
T  35080381 ttgc 35080384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 35081659 - 35081558
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||        |||| ||||||||||||| | ||||||||||||    
T  35081659 ggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 35081560  T
Q  405 gc 406  Q
    ||    
T  35081559 gc 35081558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 23622039 - 23621990
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgg 354  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  23622039 ggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 12961984 - 12962040
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  12961984 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggcccccta 12962040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 6230188 - 6230075
Alignment:
Q  42 ttgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataacta 141  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||  |||| ||  || |||||||| ||||| ||||     
T  6230188 ttgcattgaaagatttagcatcaattgcacataaatgcttgtagggaccaatatccctccttccaaattccagacagatgccatacgggtcccaaaactc 6230089  T
Q  142 tgttccttcaacac 155  Q
    ||||||||||||||    
T  6230088 tgttccttcaacac 6230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 406
Target Start/End: Complemental strand, 46525902 - 46525799
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 402  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||        ||||||||| |||||||||||||||||||||    
T  46525902 ttggctaatctacagttttggccccctaagtttgccaatgttgcgattttggcctcctaataaaaaaaatgaaaatttggccccctaagatttagcccct 46525803  T
Q  403 ttgc 406  Q
    ||||    
T  46525802 ttgc 46525799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 46312065 - 46312123
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 3000271 - 3000170
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||  || |||||        | |||||||||||||||||| ||||||||||||    
T  3000271 ggctaaactacagttttgaccccttaattttgttaatgttgcgattttgatcctctaataaaaaaaataaaaattttgccccctaagttttagccccttt 3000172  T
Q  405 gc 406  Q
    ||    
T  3000171 gc 3000170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 406
Target Start/End: Original strand, 46524542 - 46524641
Alignment:
Q  307 ctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccctttgc 406  Q
    |||||||||||||||| |||||||||||| | |||||||| ||||||| ||||| ||        | ||||||| |||||||||||||||||||||||||    
T  46524542 ctaaactacagttttggccccctaagtttaccaatgttgcaattttggtcccctgataaaaaaaataaaaatttggccccctaagatttagcccctttgc 46524641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 14512716 - 14512669
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgatttt 352  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14512716 ggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 2999489 - 2999591
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 402  Q
    |||||||||||||||||||||||| |||| ||||  |||||||||||||||  ||||||||        ||||||||||| |||||||  ||||||||||    
T  2999489 ttggctaaactacagttttgaccctctaactttgtcaatgttgcgattttgatcccctaat-aaaaaaatgaaaattttgacccctaaattttagcccct 2999587  T
Q  403 ttgc 406  Q
    ||||    
T  2999588 ttgc 2999591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 14204837 - 14204939
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgcccc-ctaagatttagcccctt 403  Q
    |||||||||||||||||| |||| || |||||  |||| |||||||||||||| |||||        |||||||||| |||| |||||||||||||||||    
T  14204837 ggctaaactacagttttggccccttatgtttgacaatgctgcgattttggccctctaataaaaatattgaaaattttacccctctaagatttagcccctt 14204936  T
Q  404 tgc 406  Q
    |||    
T  14204937 tgc 14204939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 50380030 - 50379972
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    ||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  50380030 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 50379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 43706962 - 43706901
Alignment:
Q  300 atcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    |||||||||||||| || ||||  |||||||| |||   |||||||||||||||||||||||    
T  43706962 atcttggctaaactccactttttgccccctaatttttaaaatgttgcgattttggcccccta 43706901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 2425527 - 2425471
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| || ||||  ||||||| ||||  ||||||||||||||||||||||||    
T  2425527 ggctaaactgcactttttgccccctatgtttcataatgttgcgattttggcccccta 2425471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 28920955 - 28920899
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| || ||||  ||||||||||||   |||||||||||||||||||||||    
T  28920955 ggctaaacttcacttttcgccccctaagtttcaaaatgttgcgattttggcccccta 28920899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 46313332 - 46313276
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||||||||||||| |||   || | ||||||||||||||||||    
T  46313332 ggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggcccccta 46313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 22417656 - 22417716
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22417656 ttggttaaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 22419000 - 22418894
Alignment:
Q  300 atcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcc 399  Q
    |||| ||||||||||| |||||| |||||||||||||  |||||| ||||||| | ||||||||        ||||||||||||||||||||||||||||    
T  22419000 atctaggctaaactacggttttggccccctaagtttgtcaatgttacgatttttgtcccctaataaaaaaaatgaaaattttgccccctaagatttagcc 22418901  T
Q  400 cctttgc 406  Q
    |||||||    
T  22418900 cctttgc 22418894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 6978203 - 6978139
Alignment:
Q  297 attatcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||||||||||| ||||||| ||||||||| |||   |||| |||||||||||| |||||    
T  6978203 attatcttggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggctcccta 6978139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 20409067 - 20409123
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  20409067 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 20409123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 12181595 - 12181650
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccct 360  Q
    ||||||||| ||||||||||| ||||| ||||  ||||||| ||||||||||||||    
T  12181595 ggctaaactgcagttttgacctcctaactttgtaaatgttgggattttggccccct 12181650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 10120173 - 10120223
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttg 353  Q
    |||||||||| ||| ||||| |||||||||||||  |||||||||||||||    
T  10120173 ttggctaaacaacaattttggccccctaagtttgtcaatgttgcgattttg 10120223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 15888990 - 15889027
Alignment:
Q  324 ccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  15888990 ccccctaagtttgcaaatgttgcaattttggcccccta 15889027  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 20410275 - 20410219
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||||||||||||| |||   |||| |||||||||| |||||||    
T  20410275 ggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgacccccta 20410219  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 406
Target Start/End: Complemental strand, 5504196 - 5504093
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 402  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||        |||| ||||||||||||| | ||||||||||    
T  5504196 ttggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 5504097  T
Q  403 ttgc 406  Q
    ||||    
T  5504096 ttgc 5504093  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 124587 - 124529
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  124587 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat 124529  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 3597323 - 3597376
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccc 358  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  3597323 ggctaaactacagttttggccccctaagtttactaatgttgcgattttggcccc 3597376  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 5502918 - 5503018
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||        |||| ||||||||||||| | |||| |||||||    
T  5502918 ggctaaactacagttttgaccct-taagtttgccaatgttgcaattttggccccctaataaaaaaaatgaatattttgccccctatgttttaaccccttt 5503016  T
Q  405 gc 406  Q
    ||    
T  5503017 gc 5503018  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 3598982 - 3598924
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||||||||||||||  ||||||| ||| | |||||||||||||||||||||||    
T  3598982 ttggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 121349 - 121450
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    |||||||||||||||||||| | |||| ||||| |||||||| |||||| |||||||||        |||| |||||||||||||   ||||||||||||    
T  121349 ggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaataaaaaaaatgaatattttgccccctatattttagccccttt 121448  T
Q  405 gc 406  Q
    ||    
T  121449 gc 121450  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 14189663 - 14189722
Alignment:
Q  304 tggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    |||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  14189663 tggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14189722  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 14190545 - 14190487
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 363  Q
    ||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  14190545 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14190487  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 17414542 - 17414600
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||||| |||||||||||| |||| |||   |||| ||||||||||||||||||    
T  17414542 ttggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggcccccta 17414600  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 17415749 - 17415695
Alignment:
Q  303 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccc 357  Q
    ||||||||||| ||||||||||||||||| |||   |||| ||||||||||||||    
T  17415749 ttggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccc 17415695  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 8061856 - 8061912
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  8061856 ggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 8061912  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 13882655 - 13882756
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 404  Q
    |||||||||||| |||||| | ||||||||||| |||||||  |||||| |||||||||        |||| ||||||||||||| | ||||||||||||    
T  13882655 ggctaaactacaattttgatctcctaagtttgccaatgttgtaattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 13882754  T
Q  405 gc 406  Q
    ||    
T  13882755 gc 13882756  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 13883926 - 13883878
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttg 353  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  13883926 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 38612219 - 38612275
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||||||||||||| |||   |||||||||||||||||||||||    
T  38612219 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38612275  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 38613475 - 38613419
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| ||||||||||||||||| |||   |||||||||||||||||||||||    
T  38613475 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38613419  T

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Target: scaffold1875 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 756 - 812
Alignment:
Q  305 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 361  Q
    ||||||||| || |||| ||||| |||||||   |||||||||||||||||||||||    
T  756 ggctaaactgcacttttcaccccttaagtttcgaaatgttgcgattttggcccccta 812  T

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