View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_24 (Length: 413)
Name: NF3804_high_24
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 5809736 - 5809352
Alignment:
| Q |
17 |
ttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctctggga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
5809736 |
ttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactggatcgagaagctgatgatcttgctgtacgtattgctctggga |
5809637 |
T |
|
| Q |
117 |
gaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagcttaggaggagcttgcgaagggtaaagttgatggcttga |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5809636 |
gaaacacaagtgatttcagaaacaaa-aacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttga |
5809538 |
T |
|
| Q |
217 |
aaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5809537 |
aaagaagtaaccatgtaattttagcgtagaacttgccttatggtgccaccgaaaatgaacttgcaaagattttggggaaatttggtagtttggataaaat |
5809438 |
T |
|
| Q |
317 |
aattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtctatgtattttctttattttg |
400 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809437 |
aattctcgcctcgacaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtctatgtattttctttattttg |
5809352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 37755168 - 37754793
Alignment:
| Q |
17 |
ttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctctggga |
116 |
Q |
| |
|
||||||||||| |||||| | | ||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||| |||| | |||||| | |
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| T |
37755168 |
ttaatagattgcagaaaacgcttctcggaaatatggtgttagtaaaagtgattttcttgatccagaagctgatgatcttgcttcacgtcattctctggca |
37755069 |
T |
|
| Q |
117 |
gaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagcttaggaggagcttgcgaagggtaaagttgatggcttga |
216 |
Q |
| |
|
|||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||||||||| ||| |
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| T |
37755068 |
caaactcaagtgatttttgaaacaaaaaatgcatttaaaaaagctggagtgaatgtggagtctctggaggagcttgtgaattgtaaagttgatggcgtga |
37754969 |
T |
|
| Q |
217 |
aaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaat |
316 |
Q |
| |
|
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37754968 |
aaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttgggaaatttggtagtttggataaaat |
37754869 |
T |
|
| Q |
317 |
aattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
390 |
Q |
| |
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||||||| ||| ||||||||||||||| |||||||||||| |||||||| | ||||||| |||| |||||||||| |
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|
| T |
37754868 |
aattctcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37754793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 37761142 - 37760767
Alignment:
| Q |
17 |
ttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctctggga |
116 |
Q |
| |
|
||||||||||| |||||| | | ||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||| |||| | |||||| | |
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|
| T |
37761142 |
ttaatagattgcagaaaacgcttctcggaaatatggtgttagtaaaagtgattttcttgatccagaagctgatgatcttgcttcacgtcattctctggca |
37761043 |
T |
|
| Q |
117 |
gaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagcttaggaggagcttgcgaagggtaaagttgatggcttga |
216 |
Q |
| |
|
|||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||||||||| ||| |
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|
| T |
37761042 |
caaactcaagtgatttttgaaacaaaaaatgcatttaaaaaagctggagtgaatgtggagtctctggaggagcttgtgaattgtaaagttgatggcgtga |
37760943 |
T |
|
| Q |
217 |
aaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaat |
316 |
Q |
| |
|
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37760942 |
aaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttgggaaatttggtagtttggataaaat |
37760843 |
T |
|
| Q |
317 |
aattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
390 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||||||| |||||||| | ||||||| |||| |||||||||| |
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|
| T |
37760842 |
aattctcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37760767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 38605535 - 38605875
Alignment:
| Q |
17 |
ttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctctggga |
116 |
Q |
| |
|
|||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| || || |||||||||||| |||||| | | ||||||||||| |
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|
| T |
38605535 |
ttaatagattacagaaaacgttactcggaaacatggtgttagtaaaagtgatttattgggtccagaagctgatgatgttgctgcaaatgttgctctggga |
38605634 |
T |
|
| Q |
117 |
gaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagcttaggaggagcttgcgaagggtaaagttgatggcttga |
216 |
Q |
| |
|
||||| | ||||||| ||||||||| || ||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||| | | |
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|
| T |
38605635 |
gaaactgatgtgattttagaaacaaaaaatgcatttaaaaaggctggagtgaatgtggagtctttggaggagcttgcggagggtaaagtttatggcgtta |
38605734 |
T |
|
| Q |
217 |
aaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaat |
316 |
Q |
| |
|
||||||||||||||||| ||||||| || || ||||| |||||||| || ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
38605735 |
aaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcagagatgtttgggaaatttggtagtttggataaaat |
38605834 |
T |
|
| Q |
317 |
aattctcgcct--acaaaaacattggccttggtatttttcc |
355 |
Q |
| |
|
||||||| ||| |||| |||||||||| |||||||||||| |
|
|
| T |
38605835 |
aattctcccctcgacaagaacattggccctggtatttttcc |
38605875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 37739316 - 37738980
Alignment:
| Q |
17 |
ttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacg-tattgctctggg |
115 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||| ||| ||||||||||| |||||| ||| |||| |||||| |
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|
| T |
37739316 |
ttaatagattgtagaaaacgctgctcggaaacatggtgttagtaaaagtgattttctggatccagaagctgatggtcttgcttcacggtatt-ctctggc |
37739218 |
T |
|
| Q |
116 |
agaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagcttaggaggagcttgcgaagggtaaagttgatggcttg |
215 |
Q |
| |
|
|||||| | | |||| ||||||||| || ||||||| ||||||||||||||| ||||| || |||||||| |||||||||||||||||||||| | |
|
|
| T |
37739217 |
agaaactgacgggattaaagaaacaaaaaatgcatttagaaaagctggagtgaacgtggagtctctggaggagcatgcgaagggtaaagttgatggcagg |
37739118 |
T |
|
| Q |
216 |
aaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaa |
315 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||||| |||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
37739117 |
aaaagaagtaaccatgtacttttagcgaaaaatttgccatatggtgctacggaaaatgatcttgcaaagatgtttgggaaatttggtagtttggataaaa |
37739018 |
T |
|
| Q |
316 |
taattctcgcct--acaaaaacattggccttggtattt |
351 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
37739017 |
taattctgccctcgacaaaaacattggccctggtattt |
37738980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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