View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_25 (Length: 410)
Name: NF3804_high_25
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 7453838 - 7454045
Alignment:
| Q |
22 |
ttcaaaccagaaaatcgttcagattcaatttctccaactacaaccaccataccgtcctcgacggccgccacctgatgaaacgcacagatccactattaaa |
121 |
Q |
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| T |
7453838 |
ttcaaaccagaaaatcgttcaaattcaatttctccgcatacaaccaccataccgtcctcaacggccgccacctgatgaaacgcacagatccactattaaa |
7453937 |
T |
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| Q |
122 |
gaacaaatatgtgcgtatggttgccggtgagagttgcagatgagagagtgataaaaagaggaagagggaggtgtttgcaaatgagaaaggggaaagtgat |
221 |
Q |
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| T |
7453938 |
gaacatatatgtgcgtatggtcgccggtgagagttgcagatgagagagtgataaaaagaggaagaggaaggtgtttgaaaatgagaaaggggagagtgat |
7454037 |
T |
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| Q |
222 |
gtacgtga |
229 |
Q |
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|||||||| |
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| T |
7454038 |
gtacgtga |
7454045 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 7454091 - 7454163
Alignment:
| Q |
275 |
tagagtataggtgaacagtaaatacgatgatatcgtatttgtgtctgnnnnnnngtgtctatttatcatttct |
347 |
Q |
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| T |
7454091 |
tagagtataggtgaacagtaaatacggtgctgtcgtatttgtgtctgtttttttgtgtccatttatcatttct |
7454163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 36795715 - 36795654
Alignment:
| Q |
349 |
ttcaattaattgcaaaacaattacttgcaacaattatctcttcaaatatttaatagcacaac |
410 |
Q |
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| T |
36795715 |
ttcaattaattgcaaaacaattacttgcaacaattatctcttcaaatatttaatagcacaac |
36795654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 1360310 - 1360356
Alignment:
| Q |
276 |
agagtataggtgaacagt-aaatacgatgatatcgtatttgtgtctg |
321 |
Q |
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| T |
1360310 |
agagtataggtgaacagtaaaatacggtgatgtcgtatttgtgtctg |
1360356 |
T |
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