View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_30 (Length: 358)
Name: NF3804_high_30
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 7459637 - 7459977
Alignment:
| Q |
12 |
gtgtgaatatacgctgatcaattaaaatattttactatcaatttcaatagtaaatttaaaaattgtaactatacgtcaacaatgacgacaagcctaatag |
111 |
Q |
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| T |
7459637 |
gtgtgaacatacactgatcaattaaaatattttactatcaatttcaatagtaaatttaaaaattgtaactatacgtcaacaatgacgacaagcctaatag |
7459736 |
T |
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| Q |
112 |
atgctggatggagggacctatagaaagaagttgattttatgatttgtaatttgccacgcatggaagtctcaaatctaaa-ttttcactcatctcaagtca |
210 |
Q |
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| T |
7459737 |
atgctggatggagggacctatagaaagaagttgattttatgatttgtaatttgccacgcatggaagtctcaaatctaaatttttcactcatctcaagtca |
7459836 |
T |
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| Q |
211 |
cgcatgcctttaaacataaaacaatgctagaattagaaaagctaagccatatgagtgtggcttaggtgaaacatttgagtgtagtaccacccaattggac |
310 |
Q |
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| T |
7459837 |
cgcatgcctttaaccataaaacaatgctagaattagaaaagctaagccatatgagtgtggcttaggtgaaaaatttgagtgtagtaccacccaattggac |
7459936 |
T |
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| Q |
311 |
aacaaatcaaagagccttacattttccaaatccctatgcta |
351 |
Q |
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| T |
7459937 |
aacaaatcaaagagccttacattttccaaatccttatgcta |
7459977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 49 - 352
Target Start/End: Original strand, 7444398 - 7444700
Alignment:
| Q |
49 |
tcaatttcaatagtaaatttaaaaattgtaacta-tacgtcaacaatgacgacaagcctaatagatgctggatggagggacctatagaaagaagttgatt |
147 |
Q |
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| T |
7444398 |
tcaatttgaatagtaaatttggaaattgttgcaactacgtcaacaatgacgacaagtatattagaggctggatgg-gggaccaatagaaagaagatgatt |
7444496 |
T |
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| Q |
148 |
ttatgatttgtaatttgccac------gcatggaagtctcaaatctaaattttcactcatctcaagtcacgcatgcctttaaacataaaacaatgctaga |
241 |
Q |
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| T |
7444497 |
tg-tgacttgtaatttgccaatgccaagcatggaattttaaaatct------tcactgatctcgagccacgcatgcctttaaccataaaacaatgctaga |
7444589 |
T |
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| Q |
242 |
attagaaaagctaagccatatgagtgtggcttaggtgaaacatttgagtgtagtaccacccaattggacaacaaatcaaagagccttacattttccaaat |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |||| ||||||||||| |
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| T |
7444590 |
attagaaaagctaagccatatgagtgtggcttaggtgaaacatttgagtgtagtaccacccaattgggcaacaaattaaagtggcttatattttccaaat |
7444689 |
T |
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| Q |
342 |
ccctatgctac |
352 |
Q |
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|| |||||||| |
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| T |
7444690 |
ccatatgctac |
7444700 |
T |
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