View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_high_35 (Length: 332)

Name: NF3804_high_35
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_high_35
NF3804_high_35
[»] chr7 (32 HSPs)
chr7 (249-332)||(13919883-13919966)
chr7 (243-332)||(37549615-37549704)
chr7 (249-332)||(19840879-19840962)
chr7 (251-332)||(26703436-26703517)
chr7 (249-332)||(14759746-14759829)
chr7 (250-321)||(19494450-19494521)
chr7 (250-321)||(22786149-22786220)
chr7 (253-321)||(13919781-13919849)
chr7 (253-324)||(25428477-25428548)
chr7 (261-332)||(26190006-26190077)
chr7 (252-321)||(25428590-25428659)
chr7 (249-321)||(26703551-26703621)
chr7 (249-321)||(17354638-17354710)
chr7 (249-321)||(33008101-33008173)
chr7 (258-330)||(45909561-45909633)
chr7 (258-320)||(23934021-23934083)
chr7 (249-306)||(27888410-27888467)
chr7 (244-321)||(32205071-32205145)
chr7 (269-318)||(14759660-14759709)
chr7 (249-321)||(22189936-22190008)
chr7 (261-321)||(31959968-31960028)
chr7 (250-321)||(45909453-45909525)
chr7 (249-302)||(6580135-6580188)
chr7 (249-318)||(10619506-10619574)
chr7 (252-321)||(19422945-19423014)
chr7 (267-320)||(42887740-42887793)
chr7 (249-317)||(2520630-2520698)
chr7 (253-321)||(11824072-11824140)
chr7 (258-330)||(17749799-17749871)
chr7 (258-330)||(24539126-24539198)
chr7 (249-321)||(27888279-27888351)
chr7 (249-317)||(31502579-31502647)
[»] chr3 (26 HSPs)
chr3 (247-332)||(54140885-54140970)
chr3 (252-332)||(38928006-38928086)
chr3 (249-332)||(37600124-37600207)
chr3 (258-332)||(24748913-24748987)
chr3 (249-332)||(29775136-29775217)
chr3 (249-321)||(37600241-37600313)
chr3 (245-332)||(10769715-10769802)
chr3 (249-321)||(21232633-21232705)
chr3 (258-321)||(46237157-46237220)
chr3 (249-321)||(10769836-10769908)
chr3 (249-321)||(28529250-28529322)
chr3 (261-321)||(54141004-54141064)
chr3 (249-321)||(37776814-37776886)
chr3 (249-319)||(27243042-27243112)
chr3 (249-318)||(46160946-46161013)
chr3 (249-321)||(20493556-20493628)
chr3 (283-321)||(138794-138832)
chr3 (283-321)||(357791-357829)
chr3 (247-321)||(5452171-5452245)
chr3 (247-321)||(29389124-29389198)
chr3 (252-321)||(30624633-30624700)
chr3 (251-321)||(38928120-38928190)
chr3 (247-317)||(52951475-52951545)
chr3 (272-321)||(43657107-43657156)
chr3 (249-305)||(46450064-46450118)
chr3 (253-321)||(40715973-40716041)
[»] chr1 (31 HSPs)
chr1 (11-147)||(1843601-1843738)
chr1 (11-147)||(1869210-1869347)
chr1 (243-332)||(11430544-11430632)
chr1 (249-332)||(11135842-11135925)
chr1 (249-332)||(41095603-41095686)
chr1 (243-332)||(32848571-32848660)
chr1 (249-321)||(11135736-11135808)
chr1 (248-321)||(41095720-41095793)
chr1 (252-321)||(41917995-41918064)
chr1 (249-321)||(11430438-11430510)
chr1 (249-321)||(44739115-44739187)
chr1 (16-147)||(1857617-1857748)
chr1 (249-321)||(9165299-9165371)
chr1 (249-321)||(32848694-32848766)
chr1 (249-332)||(14093995-14094078)
chr1 (248-332)||(13388330-13388414)
chr1 (269-319)||(28109885-28109935)
chr1 (249-321)||(43851146-43851218)
chr1 (253-325)||(50773109-50773181)
chr1 (258-323)||(4578686-4578749)
chr1 (249-306)||(30678906-30678963)
chr1 (249-321)||(14094112-14094184)
chr1 (249-324)||(29418592-29418668)
chr1 (289-332)||(41918098-41918141)
chr1 (249-324)||(43832380-43832455)
chr1 (258-332)||(50424869-50424943)
chr1 (249-318)||(6133738-6133807)
chr1 (280-325)||(24436492-24436537)
chr1 (290-322)||(8665251-8665283)
chr1 (289-321)||(13388450-13388482)
chr1 (269-317)||(50308774-50308822)
[»] chr5 (23 HSPs)
chr5 (249-321)||(40971564-40971636)
chr5 (249-332)||(42224585-42224668)
chr5 (249-332)||(24915158-24915239)
chr5 (249-332)||(24990989-24991070)
chr5 (249-321)||(42224702-42224774)
chr5 (249-332)||(26072206-26072289)
chr5 (249-332)||(17568696-17568779)
chr5 (252-321)||(32050421-32050490)
chr5 (249-321)||(4959275-4959347)
chr5 (249-321)||(4959392-4959464)
chr5 (249-321)||(6263995-6264067)
chr5 (258-332)||(13456170-13456242)
chr5 (249-332)||(8912613-8912698)
chr5 (250-318)||(6263881-6263949)
chr5 (249-332)||(40971447-40971530)
chr5 (269-318)||(17568816-17568865)
chr5 (249-306)||(34368488-34368545)
chr5 (249-305)||(2443683-2443739)
chr5 (253-325)||(34818296-34818368)
chr5 (253-316)||(28611777-28611840)
chr5 (249-321)||(13456276-13456346)
chr5 (253-305)||(8912511-8912563)
chr5 (261-321)||(26072112-26072172)
[»] chr4 (22 HSPs)
chr4 (258-330)||(51206148-51206220)
chr4 (249-332)||(13070043-13070126)
chr4 (249-318)||(42862415-42862484)
chr4 (249-321)||(42862532-42862604)
chr4 (249-325)||(44832573-44832649)
chr4 (252-322)||(37315673-37315743)
chr4 (249-318)||(40812034-40812103)
chr4 (253-321)||(8108957-8109025)
chr4 (249-321)||(13069938-13070009)
chr4 (258-321)||(2088776-2088839)
chr4 (258-321)||(16178590-16178652)
chr4 (253-322)||(39016776-39016845)
chr4 (252-321)||(43771126-43771195)
chr4 (252-332)||(2187811-2187891)
chr4 (250-318)||(47237855-47237923)
chr4 (253-319)||(2187926-2187992)
chr4 (253-321)||(37315564-37315629)
chr4 (246-306)||(20225467-20225525)
chr4 (249-318)||(40991703-40991772)
chr4 (249-321)||(34129511-34129583)
chr4 (249-321)||(44832460-44832532)
chr4 (249-321)||(50571861-50571933)
[»] chr6 (16 HSPs)
chr6 (249-332)||(19090209-19090292)
chr6 (249-321)||(6531409-6531481)
chr6 (249-321)||(19090326-19090398)
chr6 (249-332)||(10060962-10061045)
chr6 (251-332)||(19737431-19737512)
chr6 (258-321)||(35128834-35128897)
chr6 (278-321)||(4595768-4595811)
chr6 (262-321)||(19737546-19737605)
chr6 (283-324)||(9940389-9940430)
chr6 (249-321)||(373396-373468)
chr6 (253-332)||(4595845-4595922)
chr6 (249-321)||(10060856-10060928)
chr6 (289-332)||(6992305-6992348)
chr6 (252-332)||(35128724-35128800)
chr6 (249-321)||(445815-445887)
chr6 (253-321)||(34905337-34905405)
[»] chr2 (31 HSPs)
chr2 (249-332)||(37719831-37719914)
chr2 (252-321)||(42182889-42182958)
chr2 (249-321)||(28898148-28898220)
chr2 (253-321)||(1107039-1107107)
chr2 (249-321)||(1110195-1110267)
chr2 (249-321)||(15508911-15508983)
chr2 (249-332)||(20951603-20951684)
chr2 (249-321)||(31395556-31395628)
chr2 (253-332)||(27968919-27968998)
chr2 (253-332)||(28091589-28091668)
chr2 (253-332)||(28101821-28101900)
chr2 (249-332)||(42182992-42183075)
chr2 (250-328)||(1110305-1110383)
chr2 (249-321)||(4964784-4964856)
chr2 (252-324)||(28898034-28898106)
chr2 (253-313)||(37228499-37228559)
chr2 (261-325)||(37228609-37228673)
chr2 (249-324)||(15509025-15509100)
chr2 (252-321)||(45554567-45554636)
chr2 (253-332)||(4964671-4964750)
chr2 (249-332)||(37398808-37398891)
chr2 (249-321)||(41805887-41805959)
chr2 (252-318)||(37398928-37398994)
chr2 (249-318)||(11539420-11539489)
chr2 (261-306)||(25238284-25238329)
chr2 (249-318)||(40535104-40535173)
chr2 (253-317)||(6980235-6980299)
chr2 (249-321)||(12989188-12989260)
chr2 (249-321)||(18511320-18511392)
chr2 (249-321)||(26767872-26767944)
chr2 (247-279)||(29806200-29806232)
[»] chr8 (19 HSPs)
chr8 (260-332)||(1205930-1206002)
chr8 (253-321)||(35689481-35689549)
chr8 (264-332)||(35689583-35689651)
chr8 (258-332)||(7599425-7599499)
chr8 (278-332)||(33417785-33417839)
chr8 (249-321)||(7599533-7599605)
chr8 (258-305)||(1205833-1205880)
chr8 (249-332)||(13407318-13407401)
chr8 (249-332)||(34303432-34303515)
chr8 (249-306)||(8914768-8914825)
chr8 (290-323)||(16441842-16441875)
chr8 (253-318)||(23142937-23143002)
chr8 (261-306)||(24055932-24055977)
chr8 (290-323)||(44709309-44709342)
chr8 (249-321)||(1977284-1977356)
chr8 (261-321)||(11310477-11310537)
chr8 (249-281)||(23142812-23142844)
chr8 (249-321)||(31301112-31301184)
chr8 (253-321)||(32072098-32072166)
[»] scaffold0054 (1 HSPs)
scaffold0054 (249-332)||(30907-30990)
[»] scaffold0099 (1 HSPs)
scaffold0099 (283-328)||(27421-27467)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 13919966 - 13919883
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||| ||||||    
T  13919966 gaggaatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtaggacctacact 13919883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 37549615 - 37549704
Alignment:
Q  243 gataaggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||  |||| |||||||||||| ||||||    
T  37549615 gataaagaggaatgctagcaacactctcttttgagcactttctctagcacttactcttttattggttgaattcaatgtaggacctacact 37549704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 19840879 - 19840962
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||||    
T  19840879 gaggaatgctagcaacactctattttgagcactctctctagcactcactcttttattgggtgaaatcaatataggacctacact 19840962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 26703436 - 26703517
Alignment:
Q  251 ggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||| |||||||||| ||||||    
T  26703436 ggaatgctagcaacactctcttctgagcactctctctagcactcactcttttattgggtgaaataaatgtaggacctacact 26703517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 14759829 - 14759746
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||||||| || || |||| |||||||||||||  |||||| |||||||||| ||||||    
T  14759829 gaggaatgctagcaacactctcttttgagcactctccctagcacccactcttttattggatgaaattaatgtaggacctacact 14759746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 19494521 - 19494450
Alignment:
Q  250 aggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||    
T  19494521 aggaatgctagcagcactctcttttgagtactttctctagtactcactcttttattgggtgaaatcaatgta 19494450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 22786149 - 22786220
Alignment:
Q  250 aggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||||||||||    
T  22786149 aggaatgctagcaacactctcttttgagcactctctctagcactcacttttttattaggtgaaatcaatgta 22786220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 13919781 - 13919849
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| |||||||||||||||||||||||| ||||| |||||| ||| ||||||| ||||||||||||||    
T  13919781 aatgctagcaacactctcttttgagcactctctctagcactcgctcatttattgggtgaaatcaatgta 13919849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 25428477 - 25428548
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtagga 324  Q
    |||| |||||||||||||||||||||||| ||| | ||||||||||||||||||  | ||||||||||||||    
T  25428477 aatgatagcaacactctcttttgagcactctctttagcactcactcttttattggataaaatcaatgtagga 25428548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 26190077 - 26190006
Alignment:
Q  261 caacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||| || ||||||| ||||||| ||||||    
T  26190077 caacactctcttttgaacactttctctaacactcactcttttattgggtaaaatcaacgtaggacctacact 26190006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 25428659 - 25428590
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| |||||||||||||||||||||||| | | | | |||||||||||||||| ||||||||||||||    
T  25428659 gaatgctagcaacactctcttttgagcactctttttagtactcactcttttattgtgtgaaatcaatgta 25428590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 26703621 - 26703551
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||||  |||||||| | ||||| |||||||||||||||||| ||||||||||||||    
T  26703621 gaggaatgctagcaacactct--tttgagcattctctctagcactcactcttttattgggtgaaatcaatgta 26703551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 17354710 - 17354638
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||| ||||||||||| |||||  |||||| ||||||||||  |||||||||||||    
T  17354710 gaggaatgctagcaacactcttttttgagcactctctctaacactcattcttttattggatgaaatcaatgta 17354638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 33008101 - 33008173
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||| ||||||| |||| ||||| ||||||||||||||||||  |||||||| ||||    
T  33008101 gaggaatgctagcaacactcacttttgaacactatctctagcactcactcttttattggatgaaatcattgta 33008173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 45909633 - 45909561
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacataca 330  Q
    |||||||||||||||||||  ||| |||||  ||||||||||||||||| || ||||||||||||||| ||||    
T  45909633 tagcaacactctcttttgaatactctctctaacactcactcttttattgggtaaaatcaatgtaggacctaca 45909561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 23934083 - 23934021
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgt 320  Q
    ||||||||||||||||| |||||||| ||| ||||| |||||||||||| || ||||||||||    
T  23934083 tagcaacactctcttttaagcactttgtctagcacttactcttttattgggtaaaatcaatgt 23934021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 27888467 - 27888410
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattg 306  Q
    |||||||| |||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  27888467 gaggaatgctagcaacactctcttttgagcactctctctaacactcactctcttattg 27888410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 32205071 - 32205145
Alignment:
Q  244 ataaggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| |||||||| ||||||||||| ||||||| |||| |||||   ||||||||||||||||  |||||||||||||    
T  32205071 ataaagaggaatgctagcaacactcacttttgaacactctctct---actcactcttttattggatgaaatcaatgta 32205145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 14759660 - 14759709
Alignment:
Q  269 tcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    ||||||||| ||| || || ||||||||||||||||||||||||||||||    
T  14759660 tcttttgagtactctccctagcactcactcttttattgagtgaaatcaat 14759709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 22189936 - 22190008
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||| |||||||  |||| | |||| ||||| ||||||||||||||||||  |||||||||||||    
T  22189936 gaggaatgctagaaacactcatttttcaacactctctctagcactcactcttttattggatgaaatcaatgta 22190008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 31960028 - 31959968
Alignment:
Q  261 caacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||||||||||||||||||| ||||| |||||||||  |||||||  |||||| ||||||    
T  31960028 caacactctcttttgagcactctctctagcactcacttatttattggatgaaattaatgta 31959968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 45909453 - 45909525
Alignment:
Q  250 aggaatggtagcaacactctcttttgagcactttctcttgcactcactc-ttttattgagtgaaatcaatgta 321  Q
    ||||||| || ||||||| ||||||||||||| || || ||| |||||| |||||||| ||||||||||||||    
T  45909453 aggaatgctatcaacactatcttttgagcactctccctagcattcactctttttattgggtgaaatcaatgta 45909525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 6580188 - 6580135
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactctttt 302  Q
    |||||||||||||||||||| ||||| | |||| | ||||||||||||| ||||    
T  6580188 gaggaatggtagcaacactcacttttcaacactctttcttgcactcactttttt 6580135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 10619574 - 10619506
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||||||| ||||||||||||||||||| |||| ||||| ||||  ||||| || ||| |||||||||||    
T  10619574 gaggaatgctagcaacactctcttttgatcactctctctagcacctactctctt-ttgggtgaaatcaat 10619506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 19423014 - 19422945
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| ||||||||||| ||||| | |||| |||||  |||||||||||| ||||  |||||||||||||    
T  19423014 gaatgttagcaacactcacttttcaacactctctctatcactcactctttcattggatgaaatcaatgta 19422945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 42887793 - 42887740
Alignment:
Q  267 tctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgt 320  Q
    |||||||||| |||| ||| | |||||| |||||||||||||||||| ||||||    
T  42887793 tctcttttgatcactctctttagcactcgctcttttattgagtgaaaccaatgt 42887740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 2520630 - 2520698
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaa 317  Q
    ||||| || ||| ||||||||||||| | |||| ||||   ||||||||||||||||| ||||||||||    
T  2520630 gaggagtgctaggaacactctcttttcaacactctctccaacactcactcttttattgggtgaaatcaa 2520698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 11824072 - 11824140
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| |||||||||||  |||| | | || ||||| ||||||||||||||||||  |||||||||||||    
T  11824072 aatgttagcaacactcatttttcaacgctctctctagcactcactcttttattggatgaaatcaatgta 11824140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 17749871 - 17749799
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacataca 330  Q
    ||||||||||||||||||  |||| |||||  |||||||||| | |||| || |||||||||| || ||||||    
T  17749871 tagcaacactctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgggtcataca 17749799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 24539126 - 24539198
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacataca 330  Q
    ||||||||||||||||||  |||| |||||  |||||||||| | |||| || |||||||||| || ||||||    
T  24539126 tagcaacactctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgggtcataca 24539198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 27888279 - 27888351
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||| |||||||||||| |||||  ||||||| || | ||||  | |||||||||||    
T  27888279 gaggaatgctagcaacactcacttttgagcactctctctaacactcaccctctcattggataaaatcaatgta 27888351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 31502647 - 31502579
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaa 317  Q
    |||||||| ||||||||||| ||||| | || | |||||  |||||||||||||||||  |||||||||    
T  31502647 gaggaatgctagcaacactcacttttcaacagtctctctaacactcactcttttattggatgaaatcaa 31502579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 54140885 - 54140970
Alignment:
Q  247 aggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||  |||||||||||||| || ||||||    
T  54140885 aggaggaatgctagcaacactctcttttgagcactttctctagcactcactcatttattggatgaaatcaatgtagaacctacact 54140970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 38928006 - 38928086
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||| ||||||||||||||||||| ||||||||||  ||||||||||||||||| |||||||||||||| ||| ||||||    
T  38928006 gaatgctagcaacactctcttttgatcactttctctaacactcactcttttattgggtgaaatcaatgtaagacctacact 38928086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 37600124 - 37600207
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||||||| ||||| |||| |||||||||||||  |||| |||||||||||| ||||||    
T  37600124 gaggaatgctagcaacactctcttttgagcactctctctagcacccactcttttattggttgaattcaatgtaggacctacact 37600207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 24748913 - 24748987
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||||  ||||||||||||||||| ||||||    
T  24748913 tagcaacactctcttttgagcactctctctaacactcactcttttattggatgaaatcaatgtaggacctacact 24748987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 29775136 - 29775217
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||||||| ||||| |||  ||||||||||||| |||||||||| ||||||| ||||||    
T  29775136 gaggaatgctagcaacactctcttttgagcactctctctagca--cactcttttattgggtgaaatcaaggtaggacctacact 29775217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 37600313 - 37600241
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| || ||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||    
T  37600313 gaggaatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgta 37600241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 10769715 - 10769802
Alignment:
Q  245 taaggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||||| ||  |||||||||||||||||||| ||||| ||||| |||||||||||   ||||||||||||||||| ||||||    
T  10769715 taaggaggaatgctaataacactctcttttgagcactctctctagcacttactcttttatttgatgaaatcaatgtaggacctacact 10769802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 21232705 - 21232633
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||| |||||||||||||||||| | ||||||| | |||||||| ||||||||||||||    
T  21232705 gaggaatgctagcaacaccctcttttgagcactttctttagcactcatttttttattgggtgaaatcaatgta 21232633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 46237220 - 46237157
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||  |||||||||||||    
T  46237220 tagcaacactctcttttgagcactctctctagcaatcactcttttattggatgaaatcaatgta 46237157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 10769908 - 10769836
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||||||||||||||| |||||  |||  |||||||||||  ||||||||||||||    
T  10769908 gaggaatgctagcaacactctcttttgagcactctctctatcaccgactcttttatttggtgaaatcaatgta 10769836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 28529250 - 28529322
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||| ||||| | |||| ||||| ||||||||||||||||||  |||||||||||||    
T  28529250 gaggaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgta 28529322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 54141064 - 54141004
Alignment:
Q  261 caacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||||| ||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||    
T  54141064 caacactttcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgta 54141004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 37776886 - 37776814
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||| ||||| | |||||||||  |||||||||||||||||   |||||||||||||    
T  37776886 gaggaatgctagcaacactcacttttcaacactttctccagcactcactcttttattagatgaaatcaatgta 37776814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 27243042 - 27243112
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatg 319  Q
    |||| ||| ||||||||||||||||||| |||| |||||  |||||||||||||||||  | |||||||||    
T  27243042 gagggatgctagcaacactctcttttgaacactctctctaacactcactcttttattggataaaatcaatg 27243112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 46160946 - 46161013
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||||||| ||||||||||| ||||||| ||||  |||| ||||||||||||||||||  ||||||||||    
T  46160946 gaggaatgctagcaacactcacttttgaacact--ctctagcactcactcttttattggatgaaatcaat 46161013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 20493628 - 20493556
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||| ||||| | |||| |||||  ||||||||| |||||||  |||||||||||||    
T  20493628 gaggaatgctagcaacactcacttttcaacactctctctaacactcactcatttattggatgaaatcaatgta 20493556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 138794 - 138832
Alignment:
Q  283 tctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  138794 tctctagcactcactcttttattgaatgaaatcaatgta 138832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 357791 - 357829
Alignment:
Q  283 tctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  357791 tctctagcactcactcttttattgagggaaatcaatgta 357829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 5452245 - 5452171
Alignment:
Q  247 aggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||||| ||||||||||| ||||| | |||| ||| |  || ||||||||||||||  |||||||||||||    
T  5452245 aggaggaatgctagcaacactcacttttcaacactctctttaacattcactcttttattggatgaaatcaatgta 5452171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 29389198 - 29389124
Alignment:
Q  247 aggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| ||||| ||||||||||| ||||||||||||  || |  |||||||||||| ||||| | |||||||||||    
T  29389198 aggatgaatgctagcaacactcacttttgagcactcactttaacactcactctttcattgaataaaatcaatgta 29389124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 30624633 - 30624700
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| ||||||||||| |||||||||||  |||||  |||||||||||||||||| | |||| ||||||    
T  30624633 gaatgctagcaacactcacttttgagcac--tctctaacactcactcttttattgaataaaattaatgta 30624700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 38928190 - 38928120
Alignment:
Q  251 ggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||| |||||||||| ||||||| ||||| ||||| | | ||| |||||||||| || |||||||||||    
T  38928190 ggaatgctagcaacactatcttttgtgcactatctctagtattcagtcttttattgggtaaaatcaatgta 38928120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 52951545 - 52951475
Alignment:
Q  247 aggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaa 317  Q
    ||||||| || ||||||||||||||||| | |||| ||||| ||||||||||| | ||||  |||||||||    
T  52951545 aggaggagtgctagcaacactctctttttaacactctctctagcactcactctctcattggatgaaatcaa 52951475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 43657156 - 43657107
Alignment:
Q  272 tttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||||||||||| ||||||||| |||||||   |||||||||||||    
T  43657156 tttgagcactttctctagcactcactattttatttgatgaaatcaatgta 43657107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 46450064 - 46450118
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttatt 305  Q
    |||||||| ||||||||||| ||||||| |||  ||||| |||||||||||||||||    
T  46450064 gaggaatgctagcaacactcacttttgaacac--tctctagcactcactcttttatt 46450118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 40716041 - 40715973
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| ||||||||||| ||||| | |||| ||||| ||||||||||||||||   ||||||| ||||||    
T  40716041 aatgttagcaacactcacttttcaacactctctctagcactcactcttttatatggtgaaattaatgta 40715973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 1843601 - 1843738
Alignment:
Q  11 cacagatggagatatcagatatgacagcctgaaagaacttgaactgatagtattggacgatggaaggtgattgtggcatgacaaaatgaagt-accattt 109  Q
    |||| ||||||||||| ||||||||||| ||||||| | || |||||||| |||||| ||||| || |||||||   | ||||||||| ||| |||||||    
T  1843601 cacacatggagatatcggatatgacagcttgaaagaccatgtactgatagcattggatgatggcagatgattgttttaagacaaaatgcagtaaccattt 1843700  T
Q  110 cattattttaggagtttttgcatcctgatttcagttta 147  Q
    ||||||||||||||||||||||| |  |||||||||||    
T  1843701 cattattttaggagtttttgcatacaaatttcagttta 1843738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 1869210 - 1869347
Alignment:
Q  11 cacagatggagatatcagatatgacagcctgaaagaacttgaactgatagtattggacgatggaaggtgattgtggcatgacaaaatgaagt-accattt 109  Q
    |||| ||||||||||| ||||||||||| ||||||| | || |||||||| |||||| ||||| || |||||||   | ||||||||| ||| |||||||    
T  1869210 cacacatggagatatcggatatgacagcttgaaagaccatgtactgatagcattggatgatggcagatgattgttataagacaaaatgcagtaaccattt 1869309  T
Q  110 cattattttaggagtttttgcatcctgatttcagttta 147  Q
    ||||||||||||||||||||||| |  |||||||||||    
T  1869310 cattattttaggagtttttgcatacaaatttcagttta 1869347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 11430632 - 11430544
Alignment:
Q  243 gataaggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||| ||||||    
T  11430632 gataaagaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattg-gtgaattcaatgtaggacctacact 11430544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 11135925 - 11135842
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||| ||| |||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  11135925 gagggatgctagcaacactctcttttgaggactctctctagcactcactcttttattgggtgaaatcaatgtaggacctacact 11135842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 41095603 - 41095686
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||  ||||||| |||||||||||||||||| ||||||    
T  41095603 gaggaatgctagcaacactctcttttgagcactctctctagcactcacttatttattgggtgaaatcaatgtaggacctacact 41095686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 32848571 - 32848660
Alignment:
Q  243 gataaggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||| ||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||  |||| |||||||||||| ||||||    
T  32848571 gataaagaggactgctagcaacactctcttttgagcactttctctagcacttactcttttattggttgaattcaatgtaggacctacact 32848660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 11135736 - 11135808
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||    
T  11135736 gaggaatgctagcaacactctcttttgagcactctctctagcactcactattttattgggtgaaatcaatgta 11135808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 41095793 - 41095720
Alignment:
Q  248 ggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| |||| |||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||    
T  41095793 ggagaaatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgta 41095720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 41917995 - 41918064
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| |||||||||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||    
T  41917995 gaatgctagcaacactctcttttgagcaccctctctagcactcactcttttattgggtgaaatcaatgta 41918064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 11430438 - 11430510
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| || ||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||    
T  11430438 gaggaatgctaacaacactctcttttgagcactctttctagcactcactcttttattgggtgaaatcaatgta 11430510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 44739115 - 44739187
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||||| ||||||    
T  44739115 gaggaatgttagcaacactctcttttgaacactctctctagcactcactcttttcttgagtgaaattaatgta 44739187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 1857617 - 1857748
Alignment:
Q  16 atggagatatcagatatgacagcctgaaagaacttgaactgatagtattggacgatggaaggtgattgtggcatgacaaaatgaagtaccatttcattat 115  Q
    ||||||||||| ||||||||||| ||||||| |  | |||||||  |||||| ||||| || |||||||   | ||||||||| ||| |||||||||||     
T  1857617 atggagatatcggatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagttccatttcattac 1857716  T
Q  116 tttaggagtttttgcatcctgatttcagttta 147  Q
    ||||||||||||||||| |  |||||||||||    
T  1857717 tttaggagtttttgcatacaaatttcagttta 1857748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 9165299 - 9165371
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| || | |||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||    
T  9165299 gaggaatgctatccacactctcttttgaccactctatcttgcactcactcttttattgggtgaaatcaatgta 9165371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 32848766 - 32848694
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| || |||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||| ||||    
T  32848766 gaggaatgctaacaacactctcttttgaacactctctctagcactcactcttttattgggtgaaatcattgta 32848694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 14093995 - 14094078
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| ||||||||||||||||||| |||| | | |  |||||||| ||| ||||||||||||||||||||||| ||||||    
T  14093995 gaggaatgttagcaacactctcttttgaacactctttgtaacactcactttttgattgagtgaaatcaatgtaggacctacact 14094078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 13388330 - 13388414
Alignment:
Q  248 ggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||||||| |||||||||||||||||||  ||| |||||  |||||||| ||||||||  |||||||||||||| || ||||||    
T  13388330 ggaggaatgctagcaacactctcttttgaatactctctctaacactcacttttttattggatgaaatcaatgtagtacctacact 13388414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 28109885 - 28109935
Alignment:
Q  269 tcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatg 319  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  28109885 tcttttgagcactttctctagcactcacttttttattgggtgaaatcaatg 28109935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 43851218 - 43851146
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||||||||| ||| |  ||||| | |||||||| ||||||| ||||||||||||||    
T  43851218 gaggaatgttagcaacactctcttttaagcgcactctctagtactcactcatttattgggtgaaatcaatgta 43851146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 50773109 - 50773181
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggac 325  Q
    |||| |||||| |||||||||||| |||| ||||| ||||||| |||||||||| || |||| ||||||||||    
T  50773109 aatgctagcaatactctcttttgaacactctctctagcactcattcttttattgggtaaaattaatgtaggac 50773181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 4578749 - 4578686
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtagg 323  Q
    ||||||||||||||||| | ||||  ||||  ||||||||||||||||| ||||||||||||||||    
T  4578749 tagcaacactctcttttcaacact--ctctaacactcactcttttattgggtgaaatcaatgtagg 4578686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 30678906 - 30678963
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattg 306  Q
    |||||||| |||||||||||| ||||||||||| |||||  |||||||||| ||||||    
T  30678906 gaggaatgctagcaacactcttttttgagcactctctctaacactcactctcttattg 30678963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 14094184 - 14094112
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||| ||| | |||||||| |||| ||||  ||||||||| |||||||| ||||||||||||||    
T  14094184 gaggaatgctagcgacattatcttttgaacactctctccagcactcacttttttattgggtgaaatcaatgta 14094112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 29418668 - 29418592
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactctttt-attgagtgaaatcaatgtagga 324  Q
    |||||||| |||||||| |||||||||| |||| ||| |  |||||||| |||| |||| |||||||||||||||||    
T  29418668 gaggaatgctagcaacagtctcttttgatcactctctatatcactcactttttttattgggtgaaatcaatgtagga 29418592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 41918141 - 41918098
Alignment:
Q  289 gcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||||||||||| || ||||||||||||||| ||||||    
T  41918141 gcactcactcttttattgggtaaaatcaatgtaggacctacact 41918098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 43832455 - 43832380
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtagga 324  Q
    |||||||| || ||| |||||||||||| |||| | ||| ||| |||||||||||||  | |||||||||||||||    
T  43832455 gaggaatgatatcaaaactctcttttgaacactctttctagcattcactcttttattcggcgaaatcaatgtagga 43832380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 50424869 - 50424943
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||||||||||  ||||| |||||  || ||||| |||||||| || |||||||||| || ||||||||    
T  50424869 tagcaacactctcttttaggcactctctctaacattcacttttttattgggttaaatcaatgtgggtcatacact 50424943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 6133807 - 6133738
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||||||| ||||||||||| ||||| | || | ||||| |||||||| |||||||||  ||||||||||    
T  6133807 gaggaatgctagcaacactcacttttcaacaatctctctagcactcacccttttattggatgaaatcaat 6133738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 24436492 - 24436537
Alignment:
Q  280 ctttctcttgcactcactcttttattgagtgaaatcaatgtaggac 325  Q
    ||||||||  ||||| ||||||||||| ||||||||||||||||||    
T  24436492 ctttctctaacactccctcttttattgggtgaaatcaatgtaggac 24436537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 8665251 - 8665283
Alignment:
Q  290 cactcactcttttattgagtgaaatcaatgtag 322  Q
    |||||||||||||||||| ||||||||||||||    
T  8665251 cactcactcttttattgaatgaaatcaatgtag 8665283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 13388482 - 13388450
Alignment:
Q  289 gcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||||||||||||| ||||||||||||||    
T  13388482 gcactcactcttttattgggtgaaatcaatgta 13388450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 50308774 - 50308822
Alignment:
Q  269 tcttttgagcactttctcttgcactcactcttttattgagtgaaatcaa 317  Q
    |||||| |||| | ||||| |||||||||||||||||| ||||||||||    
T  50308774 tcttttaagcattctctctagcactcactcttttattgggtgaaatcaa 50308822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 40971636 - 40971564
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  40971636 gaggaatgctaacaacactctcttttgagcactctctctagcactcactcttttattgagtgaaatcaatgta 40971564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 42224585 - 42224668
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||| ||| ||||  |||||||||||||||||| |||||||||||||||||| ||||||    
T  42224585 gaggaatgctagcaacactctcttttgagaactctctccagcactcactcttttattgggtgaaatcaatgtaggacctacact 42224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 24915239 - 24915158
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||  ||||||||||||||||| ||||||  |||| |||||||||||||||||| |||||||||||||||||||||||||    
T  24915239 gaggaatactagcaacactctcttttaagcact--ctctagcactcactcttttattgggtgaaatcaatgtaggacatacact 24915158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 24991070 - 24990989
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||  ||||||||||||||||| ||||||  |||| |||||||||||||||||| |||||||||||||||||||||||||    
T  24991070 gaggaatactagcaacactctcttttaagcact--ctctagcactcactcttttattgggtgaaatcaatgtaggacatacact 24990989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 42224774 - 42224702
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  42224774 gaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgta 42224702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 26072289 - 26072206
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||||| | ||||| |||||||||||||||||| |||||| |||||| |||| ||||||    
T  26072289 gaggaatgctagcaacactctcttttgagcattctctctagcactcactcttttattgggtgaaaacaatgtgggacctacact 26072206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 17568696 - 17568779
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||||||| || || |||| |||||||||||||  |||||| |||||||||| ||||||    
T  17568696 gaggaatgctagcaacactctcttttgagcactctccctagcacccactcttttattggatgaaattaatgtaggacctacact 17568779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 32050490 - 32050421
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| |||||||||||||||||||||| | ||||| ||||||||| |||||||| ||||||||||||||    
T  32050490 gaatgctagcaacactctcttttgagcattctctctagcactcacttttttattgggtgaaatcaatgta 32050421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 4959275 - 4959347
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||||||||||||||| |||||   || ||||||||||||| ||||||||||||||    
T  4959275 gaggaatgctagcaacactctcttttgagcactctctctaatacccactcttttattgggtgaaatcaatgta 4959347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 4959464 - 4959392
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| || ||| |||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||    
T  4959464 gaggagtgctagtaacactctcttttgagcactctctctagcactcactcttttattgggggaaatcaatgta 4959392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 6264067 - 6263995
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| || ||||||||||||||||| |||||| | ||| ||||||||||||||| || ||||||||||||||    
T  6264067 gaggagtgctagcaacactctcttttaagcactctatctagcactcactcttttagtgggtgaaatcaatgta 6263995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 13456170 - 13456242
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||||||||||||| |||  |||| |||||||||||||||||  |||||||||||||||| | ||||||    
T  13456170 tagcaacactctcttttgagtact--ctctagcactcactcttttattaggtgaaatcaatgtaggtcctacact 13456242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 8912698 - 8912613
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcac--tttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||| ||||||||||||||  | |||||  ||||||||||||||||  ||||||||||| || ||||||||||    
T  8912698 gaggaatgttagcaacagtctcttttgagcacactctctctatcactcactcttttattaggtgaaatcaatatatgacatacact 8912613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 6263881 - 6263949
Alignment:
Q  250 aggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    ||||||| ||| |||||||||||||||||||| |||||  ||||||||| ||||||| || ||||||||    
T  6263881 aggaatgttagtaacactctcttttgagcactctctctatcactcactcctttattgggtaaaatcaat 6263949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 40971447 - 40971530
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||| || ||||||||||||||||||| |||| | |||  |||||||| |||||||| || ||||||||||| ||| ||||||    
T  40971447 gaggagtgctagcaacactctcttttgaacactctatctaacactcactattttattgggtaaaatcaatgtaagacctacact 40971530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 17568865 - 17568816
Alignment:
Q  269 tcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    ||||||||| ||| || || ||||||||||||||||||||||||||||||    
T  17568865 tcttttgagtactctccctagcactcactcttttattgagtgaaatcaat 17568816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 34368545 - 34368488
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattg 306  Q
    |||||||| |||||||||||||||||||||||| |||||  ||| |||||| ||||||    
T  34368545 gaggaatgctagcaacactctcttttgagcactctctctgtcacccactctcttattg 34368488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 2443683 - 2443739
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttatt 305  Q
    |||||||| |||||||||||||||||||||||| | ||| | |||| ||||||||||    
T  2443683 gaggaatgctagcaacactctcttttgagcactctgtctagaactcgctcttttatt 2443739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 34818368 - 34818296
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggac 325  Q
    |||| ||| |||| ||||||||||||||| |||||  |||||||| |||||||  || |||||||||||||||    
T  34818368 aatgctaggaacattctcttttgagcactctctctaacactcacttttttatttggtaaaatcaatgtaggac 34818296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 28611777 - 28611840
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatca 316  Q
    |||| |||||||||||||||||||||||| |||||  |||  ||||||||||||| | ||||||    
T  28611777 aatgctagcaacactctcttttgagcactctctctaacaccaactcttttattgatttaaatca 28611840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 13456346 - 13456276
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||| |||| ||||||||||||| ||| ||  |||||||||||||| |  |||||||||||||    
T  13456346 gaggaatgctagcagcactttcttttgagcactctctatt--actcactcttttatcggatgaaatcaatgta 13456276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 8912511 - 8912563
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttatt 305  Q
    |||| ||||||| ||||||||| | |||||| ||| |||||||||||||||||    
T  8912511 aatgctagcaacgctctcttttaaacactttttctagcactcactcttttatt 8912563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 26072112 - 26072172
Alignment:
Q  261 caacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||||||||||||||||||| | |||   ||||| |||||| ||| ||||||||||||||    
T  26072112 caacactctcttttgagcactctttctaatactcattctttttttgggtgaaatcaatgta 26072172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 51206220 - 51206148
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacataca 330  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  51206220 tagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtaggacctaca 51206148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 13070126 - 13070043
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||| || ||||||||||||||||||| || |||||||  |||||||||||||||||||| ||||||||||||||| ||||||    
T  13070126 gaggagtgctagcaacactctcttttgaacattttctctaacactcactcttttattgagtaaaatcaatgtaggacctacact 13070043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 42862415 - 42862484
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||||    
T  42862415 gaggaatgctagcaacactctcttttgagcactatatctagcactcactcttttattgggtgaaatcaat 42862484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 42862604 - 42862532
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||  |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  42862604 gaggaatgctaataacactctcttttgagcactttctctagcactcacttttttattgggtgaaatcaatgta 42862532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 44832649 - 44832573
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggac 325  Q
    |||||||| |||||||||||||||||||||||| ||||  ||||||| | |||||||| ||||||||||||||||||    
T  44832649 gaggaatgctagcaacactctcttttgagcactctctccagcactcatttttttattgggtgaaatcaatgtaggac 44832573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 37315743 - 37315673
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtag 322  Q
    ||||| |||||||||||| ||||||||||| ||  | |||||||||||||||||| |||||||||||||||    
T  37315743 gaatgctagcaacactcttttttgagcactctcattagcactcactcttttattgggtgaaatcaatgtag 37315673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 40812034 - 40812103
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||| ||| |||||||||||| |||||| |||| ||||| |||||||||||||||||| |||||||||||    
T  40812034 gaggtatgctagcaacactcttttttgaacactctctctagcactcactcttttattgggtgaaatcaat 40812103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 8108957 - 8109025
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| ||||||||||| ||||| | |||| ||||| |||||||||||||||||| ||||||||||||||    
T  8108957 aatgctagcaacactcacttttcaacactctctctagcactcactcttttattgggtgaaatcaatgta 8109025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 13069938 - 13070009
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||| || ||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||    
T  13069938 gaggaatgctaggaatactctcttttgagcacactctctagcactcactcttttattg-gtgaaatcaatgta 13070009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 2088839 - 2088776
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||||||| ||||||| ||| |||||  |||||||||||| |||||||||||||||||||    
T  2088839 tagcaacactcttttttgagtactctctctaacactcactctttaattgagtgaaatcaatgta 2088776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 16178590 - 16178652
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||| ||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||    
T  16178590 tagcaatactctcttttgtgcactctctctagcactcactc-tttattgagtgaaatcaatgta 16178652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 39016845 - 39016776
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtag 322  Q
    |||| ||||||||||||||||||| |||| ||||| ||||| |||||||||||  || ||||||||||||    
T  39016845 aatgttagcaacactctcttttgaacactctctctagcacttactcttttattaggtaaaatcaatgtag 39016776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 43771126 - 43771195
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||||||||||||||| ||||||| |||| |||||   ||||||||||||||||  |||||||||||||    
T  43771126 gaatggtagcaacactcacttttgaacactctctctatgactcactcttttattggatgaaatcaatgta 43771195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 2187811 - 2187891
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||| ||||||||||| |||||||||||| |||||  |||||| | |||||||| |||||| |||||| |||| ||||||    
T  2187811 gaatgctagcaacactcgcttttgagcactctctctaacactcatttttttattgtgtgaaaacaatgtgggacctacact 2187891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 47237923 - 47237855
Alignment:
Q  250 aggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    ||||||| || |||||||||||||||| |||| ||||| ||| ||||||||||||||  ||||||||||    
T  47237923 aggaatgctatcaacactctcttttgaacactctctctagcattcactcttttattggatgaaatcaat 47237855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 2187992 - 2187926
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatg 319  Q
    |||| ||| |||||||||||||||||||| ||||| ||  || ||||||||||| ||||||||||||    
T  2187992 aatgttaggaacactctcttttgagcactctctctagctttcgctcttttattgggtgaaatcaatg 2187926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 37315564 - 37315629
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| |||||||||||||||||||||||| |||||  |||||||||||   ||| ||||||||||||||    
T  37315564 aatgctagcaacactctcttttgagcactctctctaacactcactctt---ttgggtgaaatcaatgta 37315629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 20225525 - 20225467
Alignment:
Q  246 aaggaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattg 306  Q
    ||||||||||| ||||||||||| ||||||| |||  ||||| ||||||||||||||||||    
T  20225525 aaggaggaatgctagcaacactcacttttgaacac--tctctagcactcactcttttattg 20225467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 40991772 - 40991703
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||||||| ||||||||||| ||||| | |||| |||||  |||||||||||| ||||  ||||||||||    
T  40991772 gaggaatgctagcaacactcacttttcaacactctctctatcactcactctttcattggatgaaatcaat 40991703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 34129583 - 34129511
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||||||||||||||| || ||||| |  ||| ||||| |||||||||||| |||||  ||| |||||||||    
T  34129583 gaggaatggtagcaacattcacttttcaaaactctctctagcactcactcttctattggatgagatcaatgta 34129511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 44832460 - 44832532
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| || ||||| ||||||||||||| | | |||  |||||||| |||||||| ||||||| ||||||    
T  44832460 gaggaatgctaacaacattctcttttgagcattctttctatcactcacttttttattgggtgaaattaatgta 44832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 50571861 - 50571933
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||| || ||||| | |||| ||||| ||||| |||||||||||   |||||||||||||    
T  50571861 gaggaatgttagcaacagtcacttttcaacactctctctagcacttactcttttattagatgaaatcaatgta 50571933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 19090209 - 19090292
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||  |||| |||||||||||| ||||||    
T  19090209 gaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattggttgaattcaatgtaggacctacact 19090292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 6531481 - 6531409
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||||||||||| ||| ||||  |||||||||||||||||| ||||||||||||||    
T  6531481 gaggaatgctagcaacactctcttttgaggactctctccagcactcactcttttattgggtgaaatcaatgta 6531409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 19090398 - 19090326
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| || ||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||    
T  19090398 gaggaatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgta 19090326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 10061045 - 10060962
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||  |||||||||||||||||||||||| |||||  |||||||| |||||||| |||| ||||||||||||| ||||||    
T  10061045 gaggaatattagcaacactctcttttgagcactctctctaacactcacttttttattgggtgagatcaatgtaggacctacact 10060962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 19737431 - 19737512
Alignment:
Q  251 ggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||| ||||||||||||||||||| || | |||||  |||||||||||||||||  | ||||||||||||||| ||||||    
T  19737431 ggaatgctagcaacactctcttttgaacattctctctatcactcactcttttattggctcaaatcaatgtaggacctacact 19737512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 35128897 - 35128834
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||||||||||||||||| |||| ||||| ||| |||||||||||||| || |||||||||||    
T  35128897 tagcaacactctcttttgaacactctctctagcagtcactcttttattgggtaaaatcaatgta 35128834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 4595768 - 4595811
Alignment:
Q  278 cactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| ||||| |||||||||||||||||||||||||||||||||    
T  4595768 cactctctctagcactcactcttttattgagtgaaatcaatgta 4595811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 19737605 - 19737546
Alignment:
Q  262 aacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||| | ||||||||||| ||||| ||||||||||||| |||| ||||||||||||||    
T  19737605 aacactttattttgagcactctctctagcactcactctttaattgggtgaaatcaatgta 19737546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 9940389 - 9940430
Alignment:
Q  283 tctcttgcactcactcttttattgagtgaaatcaatgtagga 324  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  9940389 tctctagcactcactcttttattgggtgaaatcaatgtagga 9940430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 373396 - 373468
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| || ||||| ||| ||||||||||| ||||| |||| |||| |||||||| || |||||||||||    
T  373396 gaggaatgctaacaacattcttttttgagcactctctctagcacccacttttttattgggtaaaatcaatgta 373468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 4595922 - 4595845
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||| |||||||||||||||||||| |||  || | |||||||||||||| ||  ||||||| |||||||||| ||||||    
T  4595922 aatgctagcaacactctcttttgagaact--ctttagcactcactcttttctttggtgaaattaatgtaggacttacact 4595845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 10060856 - 10060928
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||||||||||| |||| | | |  || |||||||||||||  ||||||||||||||    
T  10060856 gaggaatgctagcaacactctcttttgaacactctttataacaatcactcttttattatgtgaaatcaatgta 10060928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 6992305 - 6992348
Alignment:
Q  289 gcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||    
T  6992305 gcactcattcttttattgagtaaaatcaatgtaggacctacact 6992348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 35128724 - 35128800
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    ||||| || ||||||||||||||||||    |||||  |||||| | |||||||| |||||||||||||||||| ||||||    
T  35128724 gaatgctaacaacactctcttttgagc----tctctaacactcatttttttattgggtgaaatcaatgtaggacctacact 35128800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 445815 - 445887
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||| ||||  |||| | |||| ||||| ||||||||| ||||||||  |||||||||||||    
T  445815 gaggaatgctagcaatactcatttttcaacactatctctagcactcacttttttattggatgaaatcaatgta 445887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 34905337 - 34905405
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| |||||||||||  |||| | |||| |||||  |||||||||||||||||  |||||||||||||    
T  34905337 aatgctagcaacactcatttttcaacactctctctaacactcactcttttattggatgaaatcaatgta 34905405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 37719831 - 37719914
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||| ||||||||||||||| | ||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  37719831 gaggaatgctagcaacattctcttttgagcactctttctagcactcactcttttattggatgaaatcaatgtaggacatacact 37719914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 42182889 - 42182958
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  42182889 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgta 42182958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 28898220 - 28898148
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  28898220 gaggaatgctagcaacactcttttttgagcactctctctagcactcactcttttattgggtgaaatcaatgta 28898148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 1107039 - 1107107
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| |||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||    
T  1107039 aatgttagcaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgta 1107107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 1110195 - 1110267
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||||||| ||||| | |||||  ||||||||||||||||||||||||||||||||    
T  1110195 gaggaatgctagcaacactctctttcgagcattctctctaacactcactcttttattgagtgaaatcaatgta 1110267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 15508911 - 15508983
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||||||||||| |||| | |||  ||||||||||||||||||||||||||||||||    
T  15508911 gaggaatgttagcaacactctcttttgaacactctttctaacactcactcttttattgagtgaaatcaatgta 15508983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 20951603 - 20951684
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| ||||||||||||||||||||||||  |||| ||||| | |||||||||| |||||||||||||||||| ||||||    
T  20951603 gaggaatgctagcaacactctcttttgagcact--ctctagcacttattcttttattgggtgaaatcaatgtaggacctacact 20951684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 31395628 - 31395556
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||||||||||||||| ||| | |||||||||| ||||||| ||||||||||||||    
T  31395628 gaggaatgttagcaacactctcttttgagcactctctttagcactcactcctttattgggtgaaatcaatgta 31395556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 27968919 - 27968998
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||| |||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||| | |||||||| ||||||    
T  27968919 aatgctagcaacactctcttttgagtactctctctagcactcactcttttattgggtgaaattagtgtaggacctacact 27968998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 28091668 - 28091589
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||| |||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||| | |||||||| ||||||    
T  28091668 aatgctagcaacactctcttttgagtactctctctagcactcactcttttattgggtgaaattagtgtaggacctacact 28091589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 28101900 - 28101821
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||| |||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||| | |||||||| ||||||    
T  28101900 aatgctagcaacactctcttttgagtactctctctagcactcactcttttattgggtgaaattagtgtaggacctacact 28101821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 42183075 - 42182992
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| ||| ||||||||||||||| |||| ||||  ||||| |||||||||||| |||||||||||||||||| ||||||    
T  42183075 gaggaatgctagtaacactctcttttgaacactctctccggcactaactcttttattgggtgaaatcaatgtaggacctacact 42182992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 1110383 - 1110305
Alignment:
Q  250 aggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacata 328  Q
    |||||| ||||||||||||| ||||||||||| | |||  || |||||||||||||| |||||||||||||||||||||    
T  1110383 aggaattgtagcaacactcttttttgagcactctttctaacattcactcttttattgggtgaaatcaatgtaggacata 1110305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 4964856 - 4964784
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||| ||||||||||| ||| ||||| ||||||||| |||||||| ||||||||||||||    
T  4964856 gaggaatgctagcaacattctcttttgagtactctctctagcactcacttttttattgggtgaaatcaatgta 4964784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 324
Target Start/End: Original strand, 28898034 - 28898106
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtagga 324  Q
    ||||| |||||||||||||||||||| ||| ||| | ||||||||||||||||||  ||||||||||||||||    
T  28898034 gaatgctagcaacactctcttttgagtactctctttagcactcactcttttattggatgaaatcaatgtagga 28898106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 37228499 - 37228559
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaa 313  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  37228499 aatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaa 37228559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 37228673 - 37228609
Alignment:
Q  261 caacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggac 325  Q
    ||||||||||||||||||||| | ||| ||||||||| |||||||| ||||||||||||||||||    
T  37228673 caacactctcttttgagcactctttctagcactcacttttttattgggtgaaatcaatgtaggac 37228609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 15509100 - 15509025
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtagga 324  Q
    |||||||| ||||||||||||||||| |||||| ||| |  |||| ||||||| |||| |||||||||||||||||    
T  15509100 gaggaatgttagcaacactctctttttagcactctctatatcacttactctttaattgggtgaaatcaatgtagga 15509025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 45554567 - 45554636
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    ||||| ||||||||||| ||||| | |||| ||||| ||||||||||||||||||  |||||||||||||    
T  45554567 gaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgta 45554636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 4964671 - 4964750
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||| |||||| ||||||||||||  ||| ||||| ||||||||||||||||||  | | ||||||||||||| ||||||    
T  4964671 aatgctagcaatactctcttttgaatactctctctagcactcactcttttattggataagatcaatgtaggacctacact 4964750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 37398808 - 37398891
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| |||||||||||| ||||||||| | |||||  |||| ||| ||||||||  ||||||| ||||||||| ||||||    
T  37398808 gaggaatgctagcaacactcttttttgagcattctctctaacacttacttttttattggatgaaatccatgtaggacctacact 37398891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 41805959 - 41805887
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||| |||||  |||||||| |  |||||||||||||||||  | |||||||||||    
T  41805959 gaggaatgctagcaacactctattttggacactttctttaacactcactcttttattggataaaatcaatgta 41805887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 37398994 - 37398928
Alignment:
Q  252 gaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    ||||| || ||||||||| |||| |||||| |||||   ||||| ||||||||||||||||||||||    
T  37398994 gaatgctaacaacactctattttaagcactctctctaatactcaatcttttattgagtgaaatcaat 37398928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 11539420 - 11539489
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||||||| || ||||||||  |||||| |||| | ||| ||||||||||||||||||  ||||||||||    
T  11539420 gaggaatgctaacaacactcatttttgaacactctttctagcactcactcttttattggatgaaatcaat 11539489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 25238284 - 25238329
Alignment:
Q  261 caacactctcttttgagcactttctcttgcactcactcttttattg 306  Q
    |||||||||||||| | |||||||||| ||||||||| ||||||||    
T  25238284 caacactctcttttaaacactttctctagcactcacttttttattg 25238329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 40535173 - 40535104
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||||||| || ||||||| ||||| ||||||  |||||  ||||||||||||||||| || ||||||||    
T  40535173 gaggaatgctaacaacactatctttcgagcaccctctctaacactcactcttttattgggtaaaatcaat 40535104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 6980299 - 6980235
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaa 317  Q
    |||| |||||||| || ||||| | |||| ||||| ||||||||||||||||||  |||||||||    
T  6980299 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatcaa 6980235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 12989188 - 12989260
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||| ||||| | |||| ||| |  |||||||||||| ||||  |||||||||||||    
T  12989188 gaggaatgctagcaacactcacttttcaacactctctttctcactcactctttcattggatgaaatcaatgta 12989260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 18511392 - 18511320
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||| ||||| | |||| || ||  |||||||||||||||||  | |||||||||||    
T  18511392 gaggaatgctagcaacactcactttttaacactctcactatcactcactcttttattggataaaatcaatgta 18511320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 26767944 - 26767872
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||||||||||| ||||| | || | ||||| ||||| ||||||||| ||  |||||||||||||    
T  26767944 gaggaatgctagcaacactcacttttcaacattctctctagcacttactcttttactggatgaaatcaatgta 26767872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 29806232 - 29806200
Alignment:
Q  247 aggaggaatggtagcaacactctcttttgagca 279  Q
    |||||||||| ||||||||||||||||||||||    
T  29806232 aggaggaatgttagcaacactctcttttgagca 29806200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 1206002 - 1205930
Alignment:
Q  260 gcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||| ||| ||||||    
T  1206002 gcaacactctattttgaacactctctttagcactcactcttttattgagtgaaatcaatgtaagacctacact 1205930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 35689481 - 35689549
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||  |||||||||||||||||||| ||||| ||||||||| ||||||||  |||||||||||||    
T  35689481 aatggtaagaacactctcttttgagcactctctctagcactcacttttttattggatgaaatcaatgta 35689549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 35689651 - 35689583
Alignment:
Q  264 cactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||||||||||| ||||| ||||||||| |||||||| |||||| |||||| |||| ||||||    
T  35689651 cactctcttttgagcactctctctagcactcacttttttattgggtgaaaacaatgtgggacttacact 35689583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 7599425 - 7599499
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||||||| ||||||||| | | |||  |||||||| ||||||||||| ||||||||||||||| ||||||    
T  7599425 tagcaacactcttttttgagcattctttctaacactcacttttttattgagtaaaatcaatgtaggacctacact 7599499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 33417839 - 33417785
Alignment:
Q  278 cactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  33417839 cactctctctagcactcactcttttattgagtgaaattaatgtaggacctacact 33417785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 7599605 - 7599533
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||||||||| |||||| |||| ||||| ||||  ||||||||||||  |||||||||||||    
T  7599605 gaggaatgttagcaacactcttttttgaacactctctctagcacctactcttttattggatgaaatcaatgta 7599533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 1205833 - 1205880
Alignment:
Q  258 tagcaacactctcttttgagcactttctcttgcactcactcttttatt 305  Q
    |||||||||||||||||||||||| ||| | |||||||||||||||||    
T  1205833 tagcaacactctcttttgagcactctctttagcactcactcttttatt 1205880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 13407318 - 13407401
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||||| ||||||||||||||||||| |||| |||||  |||||| ||| | |||| || |||||||||| || ||||||||    
T  13407318 gaggaatgctagcaacactctcttttgaacactctctctaacactcattctctcattgggttaaatcaatgtgggtcatacact 13407401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 34303432 - 34303515
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||| | ||||||||  ||||||| ||||   ||||| ||||| |||||||||||| |||||||||||||| ||| ||||||    
T  34303432 gaggaaagctagcaacatcctcttttaagcatcctctctagcactaactcttttattgggtgaaatcaatgtaagacctacact 34303515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 8914768 - 8914825
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattg 306  Q
    |||||||| ||||||||||| ||||||||| || |||||  |||||||||||| ||||    
T  8914768 gaggaatgctagcaacactcacttttgagcgctctctctaacactcactctttcattg 8914825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 16441842 - 16441875
Alignment:
Q  290 cactcactcttttattgagtgaaatcaatgtagg 323  Q
    |||||||||||||||||||||||||| |||||||    
T  16441842 cactcactcttttattgagtgaaatctatgtagg 16441875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 23143002 - 23142937
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaat 318  Q
    |||| ||| |||||||| ||||||||||| ||||  ||||| ||| |||||||| |||||||||||    
T  23143002 aatgttaggaacactcttttttgagcactctctcaagcacttacttttttattgggtgaaatcaat 23142937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 24055932 - 24055977
Alignment:
Q  261 caacactctcttttgagcactttctcttgcactcactcttttattg 306  Q
    |||||||||||||||| ||||||||||  |||||||||| ||||||    
T  24055932 caacactctcttttgaacactttctctaacactcactctcttattg 24055977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 44709309 - 44709342
Alignment:
Q  290 cactcactcttttattgagtgaaatcaatgtagg 323  Q
    ||||||||||||||||| ||||||||||||||||    
T  44709309 cactcactcttttattgtgtgaaatcaatgtagg 44709342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 1977356 - 1977284
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| |||||| |||| ||||| | |||| ||||| |||||||||||| | |||  |||||||||||||    
T  1977356 gaggaatgctagcaatactcactttttaacactctctctagcactcactcttctgttggatgaaatcaatgta 1977284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 11310537 - 11310477
Alignment:
Q  261 caacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||||||||||  || |||||||   | ||||||| |||||||||||||||||||||    
T  11310537 caacactctcttttgtacaatttctctaagattcactctcttattgagtgaaatcaatgta 11310477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 23142812 - 23142844
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcact 281  Q
    |||||||| ||||||||||||||||||||||||    
T  23142812 gaggaatgctagcaacactctcttttgagcact 23142844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 31301112 - 31301184
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||||||| ||  ||||||| ||||||| |||| | ||  ||||||||||||||||||  |||||||||||||    
T  31301112 gaggaatgctaataacactcacttttgaacactatttccggcactcactcttttattggatgaaatcaatgta 31301184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 32072098 - 32072166
Alignment:
Q  253 aatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgta 321  Q
    |||| |||||||| || ||||| | |||| ||||| ||||||||||||||||||  |||||| ||||||    
T  32072098 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatgaatgta 32072166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 30907 - 30990
Alignment:
Q  249 gaggaatggtagcaacactctcttttgagcactttctcttgcactcactcttttattgagtgaaatcaatgtaggacatacact 332  Q
    |||||| | |||||||||||||||||||| ||| | ||| ||| ||||| |||||||| |||| |||||||||| || ||||||    
T  30907 gaggaaggctagcaacactctcttttgagtactctttctagcattcacttttttattgggtgacatcaatgtagaacctacact 30990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 27467 - 27421
Alignment:
Q  283 tctcttgcactcactctttta-ttgagtgaaatcaatgtaggacata 328  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  27467 tctctagcactcactcttttaattgggtgaaatcaatgtaggacata 27421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University