View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_high_37 (Length: 320)
Name: NF3804_high_37
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 13203621 - 13203760
Alignment:
| Q |
18 |
gttgttccaataataattcaagaaatttgagtttcttgtgttgttttcattttgtatcattttgtgtgttaattctgaaacaagattgaatttataggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
13203621 |
gttgttccaataataattcaagaaatttgagtttgttgtgttgttttcattttgtatcattttgtgtgtgaattctgaaacaagagtgaatttataggat |
13203720 |
T |
|
| Q |
118 |
acatgaaactgaacaacctactagtgctctagcttgtaca |
157 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13203721 |
acaagaaaatgaacaacctactagtgctctagcttgtaca |
13203760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 159 - 311
Target Start/End: Original strand, 13204817 - 13204969
Alignment:
| Q |
159 |
ggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttacctttcacccaatttatgtatttaacacattaagttcattttg |
258 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||| |||| |
|
|
| T |
13204817 |
ggttaatcatattgctattgtgtctgcaaaggaatctactttgaaaaaggtgtgttagttttcacctattttatgtatttaacacaataagttcactttg |
13204916 |
T |
|
| Q |
259 |
tttcatgattattaaggcttgcctttaggtatgcaattcaaactaatgatgat |
311 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
13204917 |
tttcatgattattaaggcttgccttcaagtattcaattcaaactaatgatgat |
13204969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 311
Target Start/End: Original strand, 13178735 - 13178892
Alignment:
| Q |
155 |
acaaggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaa-ggtgtgttacctttcacccaatttatgtatttaacacattaagttca |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||| | ||||||| |
|
|
| T |
13178735 |
acaaggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaaggtgggttacctttcacacattttatgtatttaacataagaagttca |
13178834 |
T |
|
| Q |
254 |
ttttgtttcatgattattaaggcttgcctttaggtatgcaattcaaactaatgatgat |
311 |
Q |
| |
|
||||||| |||||||||||||||| | | | ||||||||||||||||||||||||| |
|
|
| T |
13178835 |
aattgtttcgtgattattaaggcttgtcctcatgtatgcaattcaaactaatgatgat |
13178892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 13203829 - 13203913
Alignment:
| Q |
157 |
aaggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttacctttcacccaatttatgtatttaac |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
13203829 |
aaggttaatcatattgctattgtgtctccaaaggaatctactttgaaaaaggtgtgttacctttcacccattctatgtatttaac |
13203913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 13177697 - 13177798
Alignment:
| Q |
37 |
aagaaatttgagtttcttgtgttgttttcattttgtatcattttgtgtgttaattctgaaacaagattgaatttataggatacatgaaactgaacaacct |
136 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||||||| |||||||||| |||||| ||| |||||||||| |
|
|
| T |
13177697 |
aagaaatttgagttt---gtgttgttttaattttgtatcattttgtgtgttagttttgaaacaagagtgaatttata-gatacaagaaggtgaacaacct |
13177792 |
T |
|
| Q |
137 |
actagt |
142 |
Q |
| |
|
|||||| |
|
|
| T |
13177793 |
actagt |
13177798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 9944001 - 9943907
Alignment:
| Q |
179 |
tgtctccaaaggaatctactttgaaaaaggtgtgttacctttcacccaatttatgtatttaacacattaagttcattttgtttcatgattattaagg |
275 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |||| |||| |||||||||||||| | |||||||| ||||||||||| ||||||||| |
|
|
| T |
9944001 |
tgtcttcaaaggaatctactttgaaaaa--tgtgttacttttcgcccattttatgtatttaacctaataagttcactttgtttcatgcttattaagg |
9943907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University