View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_38 (Length: 318)
Name: NF3804_high_38
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 31227190 - 31227479
Alignment:
| Q |
12 |
aaaggtactcgaactccgttacaaggagaatagatacaaatactaaaacaaaatatggaccactacttaatcctagacatgcatttatttctctgtcatg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31227190 |
aaaggtactcgaactccgttacaaggagaatagatacaaatactaaaacaaaatatggaccactacttaatcctagacatgcatttatttctctgtcatg |
31227289 |
T |
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| Q |
112 |
aattgagctcttaaaatggatctggctaataggtcagtctattttatcatgattttggttgtaaaaaagcaaccacaaaaataaccggattttattaccg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31227290 |
aattgagctcttaaaatggatctggctaataggtcagtctattttatcatgattttggttgtaaaaaagcaaccacaaaaataaccggattttattaccg |
31227389 |
T |
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| Q |
212 |
aacttaattaatccaaatnnnnnnnttggaagttagagtggttcattggtcttcgtctcttcaggtttgtccagtattaatttgagatta |
301 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
31227390 |
aacttaattaatccaaataaaaaaattggaagttggagtggttcattggccttcgtctcttcaggtttgtccagtataaatttgagatta |
31227479 |
T |
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