View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_41 (Length: 290)
Name: NF3804_high_41
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 283
Target Start/End: Complemental strand, 5810016 - 5809736
Alignment:
| Q |
3 |
ttttattttatttttgttgataaaacgcaaaaaatgatatgtttccatattccaattcattaataatttcatgttttcttggcattataatatttcatct |
102 |
Q |
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| T |
5810016 |
tttttttttttttttgttgagaaaacacaaaaaatgatatgtttccattttccaatgcattaataatttcatgttttcttggcattataatatttcatct |
5809917 |
T |
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| Q |
103 |
catcattttattttgtttctttctttggtgggtacaaatatgttgttttctagtgatagaattaacataatttgtcttgtcaattttgcttcctcaaacg |
202 |
Q |
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| T |
5809916 |
catcattttattttgtttctttctttggtgggtacaaatatgttgttttctagtgatggaattaacataatttgtctggtcgattttgcttcctcaaacg |
5809817 |
T |
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| Q |
203 |
tttttggttatactgtatagctagcaggttgctttttctcttatttataggtgcatgcatattttaatcacgtgatgatgt |
283 |
Q |
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| T |
5809816 |
tttttggttatactgtatagctagcaggttgctttttctcttatttataggtgtatgcatattttaatcacgtgttgatgt |
5809736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 37755376 - 37755319
Alignment:
| Q |
41 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatttc |
98 |
Q |
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| T |
37755376 |
atgtttccattttccaatgcagtcataatttcatttttccttggcattataatatttc |
37755319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 37761350 - 37761293
Alignment:
| Q |
41 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatttc |
98 |
Q |
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| T |
37761350 |
atgtttccattttccaatgcagtcataatttcatttttccttggcattataatatttc |
37761293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 37739410 - 37739367
Alignment:
| Q |
127 |
ttggtgggtacaaatatgttgttttctagtgatagaattaacat |
170 |
Q |
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| T |
37739410 |
ttggtgggtgcaaatatgttgttttttagtgatggaattaacat |
37739367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 37755312 - 37755269
Alignment:
| Q |
127 |
ttggtgggtacaaatatgttgttttctagtgatagaattaacat |
170 |
Q |
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| T |
37755312 |
ttggtgggtgcaaatatgttgttttttagtgatggaattaacat |
37755269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 37761286 - 37761243
Alignment:
| Q |
127 |
ttggtgggtacaaatatgttgttttctagtgatagaattaacat |
170 |
Q |
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| T |
37761286 |
ttggtgggtgcaaatatgttgttttttagtgatggaattaacat |
37761243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 38605424 - 38605479
Alignment:
| Q |
41 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatt |
96 |
Q |
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|||||||||| ||||||| || |||||||||||||| ||||||||||||||||| |
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| T |
38605424 |
atgtttccattttccaatgcaaacataatttcatgtttccttggcattataatatt |
38605479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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