View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_high_43 (Length: 271)

Name: NF3804_high_43
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_high_43
NF3804_high_43
[»] chr3 (2 HSPs)
chr3 (1-256)||(8102223-8102478)
chr3 (1-221)||(40147461-40147681)
[»] chr4 (5 HSPs)
chr4 (1-171)||(7656233-7656403)
chr4 (1-152)||(7606108-7606259)
chr4 (1-156)||(7636932-7637087)
chr4 (1-156)||(7615118-7615273)
chr4 (76-156)||(7628556-7628636)
[»] chr7 (3 HSPs)
chr7 (1-156)||(8936188-8936343)
chr7 (76-152)||(8941907-8941983)
chr7 (21-156)||(8913705-8913840)
[»] chr6 (2 HSPs)
chr6 (3-148)||(6500375-6500520)
chr6 (90-159)||(11968792-11968861)
[»] chr8 (1 HSPs)
chr8 (80-161)||(15196335-15196416)
[»] scaffold0190 (1 HSPs)
scaffold0190 (90-161)||(4319-4390)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 8102478 - 8102223
Alignment:
Q  1 tgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102478 tgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggt 8102379  T
Q  101 agtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatggactttgtatccaattaacgtgggtttaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8102378 agtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatgaactttgtatccaattaacgtgggtttaaaa 8102279  T
Q  201 tttgcaaaattggtttggtactattttagttcatattcttgaatttgtgtgttgta 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102278 tttgcaaaattggtttggtactattttagttcatattcttgaatttgtgtgttgta 8102223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40147461 - 40147681
Alignment:
Q  1 tgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggt 100  Q
    ||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||  ||||||| || || ||||||||||||||| ||||||||||    
T  40147461 tgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggt 40147560  T
Q  101 agtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatggactttgtatccaattaacgtgggtttaaaa 200  Q
    || |||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||  ||||||||  |||| || |||||  ||| ||||||      
T  40147561 agcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtctaattagtgtgagtttaagg 40147660  T
Q  201 tttgcaaaattggtttggtac 221  Q
    ||||||||||  |||||||||    
T  40147661 tttgcaaaatcagtttggtac 40147681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 7656233 - 7656403
Alignment:
Q  1 tgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggt 100  Q
    ||||||||| ||| |||||||||||||||| || ||||||||||| ||||||||||||  || |||| || ||  ||  ||||||||||||||||||| |    
T  7656233 tgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaagaagct 7656332  T
Q  101 agtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatgga 171  Q
    || || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  7656333 agcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatgga 7656403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 7606259 - 7606108
Alignment:
Q  1 tgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggt 100  Q
    ||||||||| ||| |||| ||||||||||||||  | |||||||| |||||| |||||  || |||| |  |   |||||||||||||||||||||||||    
T  7606259 tgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggt 7606160  T
Q  101 agtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa 152  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  7606159 agtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa 7606108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 7637087 - 7636932
Alignment:
Q  1 tgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggt 100  Q
    ||||||||| ||| |||||||||||||||| ||  |||||||||| |||||| |||||  || ||||||  || | |||||||| |||||||||||||||    
T  7637087 tgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggt 7636988  T
Q  101 agtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 156  Q
    ||||| ||||||||||| ||||||||||   |||||||||||| ||||||||||||    
T  7636987 agtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatga 7636932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 7615273 - 7615118
Alignment:
Q  1 tgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggt 100  Q
    ||||||||| ||| ||||||| |||||||| || ||||||||||| |||||| |||||  || ||||||  || | || |||||||||||||||||||||    
T  7615273 tgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttattacggtttttgctggaatagaagaaggt 7615174  T
Q  101 agtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 156  Q
    ||||| || |||||||| |||||| | ||  |||||||||||||||||||||||||    
T  7615173 agtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga 7615118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 7628636 - 7628556
Alignment:
Q  76 tgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 156  Q
    |||||||||||||||||||||||||||||| ||||||||| | ||||||||| || |||||||||||||||||||||||||    
T  7628636 tgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 7628556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 8936188 - 8936343
Alignment:
Q  1 tgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggt 100  Q
    ||||||||| ||| |||||||||||||||| || || |||| |||  ||||| |||||  || ||||||  || | |||||||| |||||||||||||||    
T  8936188 tgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttattacagtatttgccggaatagaagaaggt 8936287  T
Q  101 agtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 156  Q
    ||||| ||||||||||| ||||||||  |  |||||||||||||||||||||||||    
T  8936288 agtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatga 8936343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 8941907 - 8941983
Alignment:
Q  76 tgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa 152  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||    
T  8941907 tgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaa 8941983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 8913705 - 8913840
Alignment:
Q  21 gatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagtatg 120  Q
    |||||||||| || ||||||||||| |||||| |||||  || ||||||  || | |||||||  |||||||||||||||| ||| ||||||||||| ||    
T  8913705 gatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttg 8913804  T
Q  121 tcttcctcacaagattttggaggcaatgggaaatga 156  Q
    ||||||||   |||||||||||| ||||||||||||    
T  8913805 tcttcctcgtgagattttggagggaatgggaaatga 8913840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 6500520 - 6500375
Alignment:
Q  3 tttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtag 102  Q
    ||||||| ||| ||||||||||||| ||||| |||||| ||||||||| |||||||  |  |||  || ||  |||||||||||||| |||| |||||||    
T  6500520 tttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttgctggaaaagaataaggtag 6500421  T
Q  103 tatggaccttcaagtatgtcttcctcacaagattttggaggcaatg 148  Q
    ||| ||||||||||| ||||||||| |||||| |||||| ||||||    
T  6500420 tatagaccttcaagtttgtcttccttacaagactttggaagcaatg 6500375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 11968861 - 11968792
Alignment:
Q  90 tagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcc 159  Q
    |||||||||||||||| ||| || |||| ||||||||| |||||||||||||||| |||  |||||||||    
T  11968861 tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggccatgaaaaatgatcc 11968792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 15196335 - 15196416
Alignment:
Q  80 tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg 161  Q
    |||||||| | ||||||||| ||||||||| || |||| ||||||||  |||||||||||||||  ||||||||||| ||||    
T  15196335 tttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccctg 15196416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 4390 - 4319
Alignment:
Q  90 tagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg 161  Q
    ||||||| ||||| ||||||||| ||||||||||||||    | ||||||||||||||  ||||||||||||    
T  4390 tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctg 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University