View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_49 (Length: 249)
Name: NF3804_high_49
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 43148091 - 43148310
Alignment:
| Q |
20 |
ctaaaatagaggacatggaaatgctgctataagatcacagattaaacaaccagaatttagtcatgcttaatgagtgagtatgaaggaagtgaggttcctg |
119 |
Q |
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| T |
43148091 |
ctaaaatagaggacatggaaatgctgctataagatcacagattaaacaaccagaatttagtcatgcttaatgagtgagtatgaaggaagtgaggttcctg |
43148190 |
T |
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| Q |
120 |
tcgtgattcaatttattctcaatcacaacggcttgaaaaatgttaggaacggaattggaagtagaaatgataaggcggtagatggcgtcttcagcaaggg |
219 |
Q |
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| T |
43148191 |
tcgtgattcaatttattctcaatcacaacggcttgaaaaatgttaggaacggaattggaagtagaaatgataaggcggtagatggcgtcttcagcaaggg |
43148290 |
T |
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| Q |
220 |
caagacgagattcacctttg |
239 |
Q |
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|||||||||||||||||||| |
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| T |
43148291 |
caagacgagattcacctttg |
43148310 |
T |
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