View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_5 (Length: 626)
Name: NF3804_high_5
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_5 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 17 - 626
Target Start/End: Complemental strand, 36527512 - 36526902
Alignment:
| Q |
17 |
aaagtcagtacataattcgcaccaataacaagaataaccatgcttcaagtggctcaagaaaacaatacaaatgacacttcattgtctcgcatcttcacat |
116 |
Q |
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| T |
36527512 |
aaagtcagtacataattcgcaccaataacaagaataaccatgcttcaagtggctcaagaaaacaatacaaatgacacttcattgtctggcatcttcacat |
36527413 |
T |
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| Q |
117 |
gatcatatcaaaacagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcatttccacaaaagcatacattgaaaacaataat |
216 |
Q |
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| T |
36527412 |
gatcatatcaaaacagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcatttccacaaaagcatacattgaaaacaataat |
36527313 |
T |
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| Q |
217 |
caaaccagcccaaactacctctacttattattgtccattcaaactgcactaaacatgatcatgctcaacattgatccttgctgacatggaaacc-gaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36527312 |
caaaccagcccaaactacctctacttattattgtccattcaaactgcactaaacatgatcatgctcaacattgatccttgctgacatggaaacccgaaaa |
36527213 |
T |
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| Q |
316 |
ataatatgatgtagtctcttataaaattggtttcagacagcaagttaattatgttagtgcaatttcactcttaaggaagattgtataacttgtactttgt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
36527212 |
ataatatgatgtagtctcttataaaattggtttcagacagcaagttaattctgttagtgcaattacactcttaagaaagagtgtataacttgtactttgt |
36527113 |
T |
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| Q |
416 |
tgattatgaattgagtggttcatacggtacaaaagataaaagtatttatagacatcatctcttacttgaataacaagtaagccaaccaactcataacaaa |
515 |
Q |
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| T |
36527112 |
tgattatgaattgagtggttcatacggtacaaaagataaaagtatttatagacatcatctcttacttgaataacaagtaagctaaccaactcataacaaa |
36527013 |
T |
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| Q |
516 |
ctagttagttactaactaactctacctctaactactcgatagttgaattataaccacaaattccattttacttagtcaagtcatcgatcattttacaata |
615 |
Q |
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| T |
36527012 |
ctagttagttactaactaactctacctctaactactcgatagttgaattataaccacaaattccattttacttagtcaagccatcgatcattttacaata |
36526913 |
T |
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| Q |
616 |
taaacagaata |
626 |
Q |
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| T |
36526912 |
taaacagaata |
36526902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 472 - 567
Target Start/End: Original strand, 47565349 - 47565444
Alignment:
| Q |
472 |
atctcttacttgaataacaagtaagccaaccaactcataacaaactagttagttactaactaactctacctctaactactcgatagttgaattata |
567 |
Q |
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| T |
47565349 |
atctcttacttgaataacaagtaagcaaactaattcacaacaaactagttagttactaactaactctacttctaactacttggtagttgaattata |
47565444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 36553923 - 36553874
Alignment:
| Q |
267 |
aaacatgatcatgctcaacattgatccttgctgacatggaaaccgaaaaa |
316 |
Q |
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| T |
36553923 |
aaacatgatcatgctcaacaatgatccttgatgacatggaaaccggaaaa |
36553874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 36553995 - 36553935
Alignment:
| Q |
125 |
caaaacagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcat |
185 |
Q |
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| T |
36553995 |
caaaacagtagaagcctcgatgctattcatccttaatgtttcacatttgctcctcaagcat |
36553935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 36533545 - 36533486
Alignment:
| Q |
244 |
ttattgtccattcaaact-gcactaaacatgatcatgctcaacattgatccttgctgaca |
302 |
Q |
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| T |
36533545 |
ttattctccattcaaccttgccctaaacatgatcatgctaaacaatgatccttgctgaca |
36533486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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