View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_high_53 (Length: 241)

Name: NF3804_high_53
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_high_53
NF3804_high_53
[»] chr4 (13 HSPs)
chr4 (15-224)||(3809500-3809709)
chr4 (22-224)||(4024719-4024921)
chr4 (15-224)||(3920172-3920381)
chr4 (15-224)||(3801073-3801282)
chr4 (15-224)||(3986482-3986691)
chr4 (30-224)||(3817083-3817277)
chr4 (21-224)||(3933402-3933605)
chr4 (22-224)||(3955923-3956125)
chr4 (27-224)||(4009483-4009680)
chr4 (32-224)||(4001791-4001983)
chr4 (22-224)||(4218127-4218332)
chr4 (15-222)||(4018206-4018413)
chr4 (30-222)||(3963710-3963902)
[»] chr5 (1 HSPs)
chr5 (15-224)||(13397434-13397643)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 3809709 - 3809500
Alignment:
Q  15 caaagggggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagct 114  Q
    ||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  3809709 caaagagggtgaccgaatatgccaaaggaattccattagttcttaaagttttggctaatatgcttcgtggaaaaaataaagaagtatgggaaagtcagct 3809610  T
Q  115 agacaaacttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatatt 214  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809609 agacaaacttagaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatatt 3809510  T
Q  215 gcatgtttct 224  Q
    ||||||||||    
T  3809509 gcatgtttct 3809500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 4024921 - 4024719
Alignment:
Q  22 ggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaaa 121  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4024921 ggtgatcgattatgccaaaggaattccattagttcttaaagttttggctcatatgcttcgtggaaaaaataaagaagtatgggaaagtcagctagacaaa 4024822  T
Q  122 cttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcatgtt 221  Q
    ||||||||||||||||||||| ||||| || | ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  4024821 cttaaaagactgccagttcaaaaagttcatgatgtaatgagactaagttatgatgatcttgatcgtttagagaaaaagtattttttagatattgcatgtt 4024722  T
Q  222 tct 224  Q
    |||    
T  4024721 tct 4024719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 3920172 - 3920381
Alignment:
Q  15 caaagggggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagct 114  Q
    ||||| |||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3920172 caaagagggtgatcgaatatgccaaaggagttccattagttcttaaagttttggctcatatgcttcgtggaaaaaacaaagaagtatgggaaagtcagct 3920271  T
Q  115 agacaaacttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatatt 214  Q
    |||||||||||||||||||||||||||| ||||| || | ||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  3920272 agacaaacttaaaagactgccagttcaaaaagttcatgatgtagtgaaactcagttatgatgatcttgatcgtttagagaaaaagtattttttagatatt 3920371  T
Q  215 gcatgtttct 224  Q
    ||||||||||    
T  3920372 gcatgtttct 3920381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 3801282 - 3801073
Alignment:
Q  15 caaagggggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagct 114  Q
    ||||| |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||    
T  3801282 caaagagggtgatcgaatatgccaaaggagttccattagttcttaaagttttggctcatatgcttcgtggaaaatgtaaagaagtatgggaaagtctgct 3801183  T
Q  115 agacaaacttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatatt 214  Q
    |||||||||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  3801182 agacaaacttaaaagactgccaattcaagaagttcatgatgtaatgagactcagttatgatgatcttgatcatttagagaaaaagtattttttagatatt 3801083  T
Q  215 gcatgtttct 224  Q
    ||||||||||    
T  3801082 gcatgtttct 3801073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 3986691 - 3986482
Alignment:
Q  15 caaagggggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagct 114  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3986691 caaagagggtggtcaattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaacaaagaagtatgggaaagtcagct 3986592  T
Q  115 agacaaacttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatatt 214  Q
    ||||||||||||||||||||||||| || ||||| || | ||| ||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  3986591 agacaaacttaaaagactgccagttaaaaaagttcatgatgtagtgaaactcagttacgatgatcttgatcgtttagagaaaaagtattttttagatatt 3986492  T
Q  215 gcatgtttct 224  Q
    ||||||||||    
T  3986491 gcatgtttct 3986482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 3817277 - 3817083
Alignment:
Q  30 attatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaaacttaaaag 129  Q
    ||||||||||||| | ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3817277 attatgccaaagggattccgttagttcttaaggttttagctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaaacttagaag 3817178  T
Q  130 actgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcatgtttct 224  Q
    ||||||||||||| ||||| || | | ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  3817177 actgccagttcaaaaagtttatgatgcaatgagactcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttct 3817083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 3933402 - 3933605
Alignment:
Q  21 gggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaa 120  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||    
T  3933402 gggtgatcgaatatgccaaaggagttccattagttcttaaagttttggctcatatgcttcgtggaaaatgtaaagaagtatgggaaagtaagctagacaa 3933501  T
Q  121 acttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcatgt 220  Q
    |||||||||||||||| ||| | ||||| || | |||||||| || ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  3933502 acttaaaagactgccaattccaaaagttcatgatgtaatgaggcttagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgt 3933601  T
Q  221 ttct 224  Q
    ||||    
T  3933602 ttct 3933605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 3955923 - 3956125
Alignment:
Q  22 ggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaaa 121  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| | || |||| ||||||||||||||| ||||||    
T  3955923 ggtgatcgattatgccaaaggaattccattagttcttaaagttttggctcatctgcttcgtggaaaagacaaggaagaatgggaaagtcagctggacaaa 3956022  T
Q  122 cttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcatgtt 221  Q
    |||||||||||||||  | || || || |  | |||||||| |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  3956023 cttaaaagactgccaaataaaaaatttcaagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtt 3956122  T
Q  222 tct 224  Q
    |||    
T  3956123 tct 3956125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 4009680 - 4009483
Alignment:
Q  27 tcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaaacttaa 126  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||| | || |||| ||||||||||||||| |||||||||||    
T  4009680 tcgattatgccaaaggaattccattagttcttgaagttttggctcatctacttcgtggaaaagacaaggaagaatgggaaagtcagctggacaaacttaa 4009581  T
Q  127 aagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcatgtttct 224  Q
    |||||||||   | || || || |  | |||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  4009580 aagactgccgaataaaaaaattcaagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttct 4009483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 4001983 - 4001791
Alignment:
Q  32 tatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaaacttaaaagac 131  Q
    ||||| ||||||| |||||||| | ||||||||||||||||| | ||||||||||||   || |||||||||||||||||||| || |||||||||| ||    
T  4001983 tatgcaaaaggaattccattaggtgttaaagttttggctcatttacttcgtggaaaagttaaggaagtatgggaaagtcagcttgataaacttaaaaaac 4001884  T
Q  132 tgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcatgtttct 224  Q
    | |||  | || ||||| || | ||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  4001883 ttccaagtaaaaaagtttatgatgtaatgagactcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttct 4001791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 4218332 - 4218127
Alignment:
Q  22 ggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaa---aagaaagaagtatgggaaagtcagctagac 118  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||   || ||  ||   ||||    ||| |||||     
T  4218332 ggtggtcgattatgccaaaggaattccattagttcttaaagttttgggtcatatgtttcgtggaaaacataataagaaaacgtgggtttatcaactagaa 4218233  T
Q  119 aaacttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcat 218  Q
    |||||  ||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  4218232 aaactggaaaaagtgccaattcaagaaattgataaagtaatgagactcagttatgatgatcttgatctcttagagcaaaagtattttttagatattgcat 4218133  T
Q  219 gtttct 224  Q
    ||||||    
T  4218132 gtttct 4218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 4018413 - 4018206
Alignment:
Q  15 caaagggggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagct 114  Q
    ||||| ||||| || ||||||||||||| | |||||||||||||||||||||||||||| | ||||| |||||| | ||   ||||||||||||||| ||    
T  4018413 caaagagggtggtcaattatgccaaaggcattccattagttcttaaagttttggctcatcttcttcgcggaaaagataagctagtatgggaaagtcaact 4018314  T
Q  115 agacaaacttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatatt 214  Q
    |||||| ||||||| | |||||  | || ||||| |  | |||| |||| | |||||||||||||| ||||    |||||| |||  ||||| |||| ||    
T  4018313 agacaagcttaaaaaaatgccaagtaaaaaagttcaagatgtaacgagattgagttatgatgatctggatcgcaaagagaaaaagattttttcagatctt 4018214  T
Q  215 gcatgttt 222  Q
    ||||||||    
T  4018213 gcatgttt 4018206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 3963710 - 3963902
Alignment:
Q  30 attatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaaacttaaaag 129  Q
    ||||||||||||| | |||||||||||||||||||||||| ||| |  | || |||||| | ||   ||||||||||||||| |||||||| |||| ||     
T  3963710 attatgccaaaggcattccattagttcttaaagttttggcgcatcttgtccgcggaaaagataagctagtatgggaaagtcaactagacaagcttagaaa 3963809  T
Q  130 actgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcatgttt 222  Q
    | |||||  | || ||||| |  | ||||||||| | |||||||||||||| ||||    |||| | |||  |||||||||||||||||||||    
T  3963810 aatgccaagtaaaaaagttcaagatgtaatgagattgagttatgatgatctagatcgcgaagagcaaaagatttttttagatattgcatgttt 3963902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 13397643 - 13397434
Alignment:
Q  15 caaagggggtgatcgattatgccaaaggaaatccattagttcttaaagttttggctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagct 114  Q
    ||||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||    
T  13397643 caaagagggtggtcgattatgccaaaggaatcccattagttcttaaagttttggctcatatgcttcgtggaaagaataaagaactatgggaaagtcagct 13397544  T
Q  115 agacaaacttaaaagactgccagttcaagaagttgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatatt 214  Q
    |||||||||||||||||||||| ||||| ||||| || | |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  13397543 agacaaacttaaaagactgccaattcaaaaagttcatgatgtaatgagactcagttttgatgatcttgatcgtttagagcagaagtattttttagatatt 13397444  T
Q  215 gcatgtttct 224  Q
    ||||||||||    
T  13397443 gcatgtttct 13397434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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