View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_high_54 (Length: 240)

Name: NF3804_high_54
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_high_54
NF3804_high_54
[»] chr6 (12 HSPs)
chr6 (18-240)||(8135425-8135643)
chr6 (18-113)||(31945287-31945382)
chr6 (18-108)||(24644804-24644905)
chr6 (18-107)||(7169932-7170032)
chr6 (73-113)||(29048251-29048291)
chr6 (18-72)||(22413982-22414036)
chr6 (19-72)||(13092175-13092228)
chr6 (24-56)||(9686242-9686274)
chr6 (181-216)||(8135398-8135433)
chr6 (26-108)||(11417201-11417294)
chr6 (68-104)||(6399959-6399995)
chr6 (24-72)||(6400002-6400050)
[»] chr3 (20 HSPs)
chr3 (18-113)||(25919102-25919208)
chr3 (24-107)||(2566188-2566282)
chr3 (18-113)||(26758355-26758461)
chr3 (18-113)||(45629320-45629426)
chr3 (18-72)||(45915056-45915110)
chr3 (18-72)||(55467491-55467545)
chr3 (70-107)||(27054211-27054248)
chr3 (71-113)||(38680938-38680980)
chr3 (146-188)||(45629245-45629287)
chr3 (18-108)||(54122452-54122555)
chr3 (182-218)||(55467728-55467764)
chr3 (180-219)||(2832483-2832522)
chr3 (25-113)||(48167395-48167493)
chr3 (18-57)||(55129933-55129972)
chr3 (70-112)||(22257409-22257451)
chr3 (69-107)||(38651901-38651939)
chr3 (181-218)||(17144814-17144851)
chr3 (26-67)||(22256156-22256197)
chr3 (24-57)||(51194416-51194449)
chr3 (24-72)||(22472922-22472970)
[»] chr1 (31 HSPs)
chr1 (18-113)||(26344898-26345004)
chr1 (18-113)||(34914258-34914364)
chr1 (19-108)||(12973700-12973800)
chr1 (20-107)||(3935592-3935690)
chr1 (18-111)||(36782222-36782325)
chr1 (70-113)||(6694281-6694324)
chr1 (18-72)||(19051297-19051351)
chr1 (18-72)||(27350818-27350872)
chr1 (18-72)||(40095261-40095315)
chr1 (18-107)||(16062988-16063087)
chr1 (28-72)||(25865860-25865904)
chr1 (27-74)||(52380593-52380640)
chr1 (18-72)||(6248259-6248313)
chr1 (70-108)||(19051243-19051281)
chr1 (23-72)||(25507057-25507106)
chr1 (181-218)||(35980472-35980509)
chr1 (35-72)||(52828999-52829036)
chr1 (19-67)||(41751331-41751379)
chr1 (70-113)||(10847440-10847483)
chr1 (25-72)||(11536974-11537021)
chr1 (70-113)||(32910277-32910320)
chr1 (25-72)||(39167124-39167171)
chr1 (70-104)||(15882062-15882096)
chr1 (70-108)||(32937992-32938030)
chr1 (181-218)||(8268617-8268654)
chr1 (71-108)||(8268777-8268814)
chr1 (28-72)||(9330568-9330612)
chr1 (24-72)||(15881993-15882041)
chr1 (190-218)||(17989008-17989036)
chr1 (24-68)||(50310796-50310840)
chr1 (28-72)||(50951886-50951930)
[»] chr2 (8 HSPs)
chr2 (18-72)||(5862518-5862572)
chr2 (20-108)||(41461209-41461309)
chr2 (26-72)||(11678176-11678222)
chr2 (26-72)||(11695654-11695700)
chr2 (181-219)||(12041674-12041712)
chr2 (71-108)||(24725710-24725747)
chr2 (181-218)||(36500714-36500751)
chr2 (28-72)||(30759481-30759525)
[»] chr5 (21 HSPs)
chr5 (18-107)||(34087554-34087643)
chr5 (26-108)||(35240677-35240761)
chr5 (25-113)||(41455000-41455099)
chr5 (24-108)||(25495222-25495317)
chr5 (69-113)||(691465-691509)
chr5 (69-113)||(6595113-6595157)
chr5 (18-113)||(36567842-36567948)
chr5 (19-72)||(31075458-31075511)
chr5 (70-107)||(33792805-33792842)
chr5 (19-72)||(34881172-34881225)
chr5 (74-113)||(2589103-2589142)
chr5 (25-72)||(6367701-6367748)
chr5 (18-57)||(10090424-10090463)
chr5 (21-68)||(12264060-12264107)
chr5 (18-72)||(6894248-6894302)
chr5 (26-72)||(17131934-17131980)
chr5 (26-72)||(32244230-32244276)
chr5 (71-113)||(40884450-40884492)
chr5 (181-218)||(10090266-10090303)
chr5 (181-218)||(27572130-27572167)
chr5 (190-218)||(25495045-25495073)
[»] chr7 (18 HSPs)
chr7 (18-72)||(22298711-22298765)
chr7 (24-107)||(11834320-11834414)
chr7 (70-113)||(31287678-31287721)
chr7 (71-113)||(26215016-26215058)
chr7 (70-107)||(6880009-6880046)
chr7 (23-72)||(20334762-20334811)
chr7 (28-72)||(34751171-34751215)
chr7 (70-108)||(1739934-1739972)
chr7 (70-108)||(7697420-7697458)
chr7 (19-73)||(8568396-8568449)
chr7 (26-72)||(35819930-35819976)
chr7 (71-108)||(2308015-2308052)
chr7 (181-218)||(8568639-8568676)
chr7 (70-107)||(25007462-25007499)
chr7 (28-57)||(43908866-43908895)
chr7 (28-68)||(23411151-23411191)
chr7 (69-113)||(27100925-27100969)
chr7 (69-113)||(27177334-27177378)
[»] chr4 (26 HSPs)
chr4 (24-107)||(23625755-23625849)
chr4 (25-72)||(29232927-29232974)
chr4 (18-72)||(1564915-1564969)
chr4 (18-68)||(27743383-27743433)
chr4 (18-72)||(35014452-35014506)
chr4 (28-72)||(17845082-17845126)
chr4 (69-113)||(23120159-23120203)
chr4 (67-107)||(23449895-23449935)
chr4 (20-72)||(45226554-45226606)
chr4 (69-113)||(45983510-45983554)
chr4 (25-57)||(48653707-48653739)
chr4 (70-108)||(8484804-8484843)
chr4 (30-73)||(21069234-21069277)
chr4 (29-72)||(40494613-40494656)
chr4 (68-107)||(45464327-45464366)
chr4 (21-68)||(45577895-45577942)
chr4 (70-113)||(49640972-49641015)
chr4 (26-72)||(19753360-19753406)
chr4 (26-72)||(19786400-19786446)
chr4 (18-72)||(20986577-20986631)
chr4 (70-108)||(21069187-21069225)
chr4 (70-108)||(42198919-42198957)
chr4 (181-218)||(4642382-4642419)
chr4 (20-57)||(8484867-8484904)
chr4 (181-218)||(36106505-36106542)
chr4 (181-217)||(48293490-48293526)
[»] chr8 (15 HSPs)
chr8 (18-72)||(13325479-13325533)
chr8 (68-113)||(4785367-4785412)
chr8 (21-108)||(37162501-37162599)
chr8 (25-72)||(9012692-9012739)
chr8 (70-113)||(18755239-18755282)
chr8 (70-107)||(12193375-12193412)
chr8 (70-107)||(12437803-12437840)
chr8 (26-106)||(33566087-33566178)
chr8 (37-72)||(7428293-7428328)
chr8 (69-107)||(11219084-11219122)
chr8 (69-107)||(22811093-22811131)
chr8 (26-72)||(36340604-36340650)
chr8 (70-108)||(38926339-38926377)
chr8 (70-107)||(30254029-30254066)
chr8 (69-113)||(31497510-31497554)
[»] scaffold0688 (2 HSPs)
scaffold0688 (181-219)||(1118-1156)
scaffold0688 (181-219)||(7687-7725)
[»] scaffold0015 (1 HSPs)
scaffold0015 (26-72)||(62592-62638)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 8135643 - 8135425
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaaatatgttgtgttttaactttttaatttgattttaatattggnnnn 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||        
T  8135643 agttgagaacattgttggatgaaaataaaattgtaatgttgggtgaaatttaaaaatatgttgtgttttaactttttaatttaattttaatattggaaaa 8135544  T
Q  118 nnnnnttattgtct-nnnnnnncctgcatcaatcaatctagtccaaaccgtattggtttggtttggttcggaagacttttagcctcaaaaccgaaccaaa 216  Q
         |||||||||        |||||||||||||||| |||||||||||||     ||||||||||||||||||||||||||||||||||||||| |||    
T  8135543 aaaaattattgtctaaaaaaaacctgcatcaatcaatccagtccaaaccgta-----ttggtttggttcggaagacttttagcctcaaaaccgaactaaa 8135449  T
Q  217 ccaaacttatcttgcggttcggat 240  Q
    ||||||||||||||||||||||||    
T  8135448 ccaaacttatcttgcggttcggat 8135425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 31945287 - 31945382
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||| |||||||||||||||||||| | | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  31945287 agttgagaacattgttgtatgaaaataaaattgtaatgatggatgaaaattaaaaatatgttgtgttttagctttttaatttgattttaatattgg 31945382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 24644804 - 24644905
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta-----------aaaatatgttgtgttttaactttttaatttgatttta 106  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||           ||||||||||||||||||  |||||||||||||||||    
T  24644804 agttgagaacattgttggatgaaaataaaattgtaatgttggatgaaatttaaaacattgttgaaaatatgttgtgttttagttttttaatttgatttta 24644903  T
Q  107 at 108  Q
    ||    
T  24644904 at 24644905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 7169932 - 7170032
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaa-----------aatatgttgtgttttaactttttaatttgatttta 106  Q
    ||||| ||||||||||||||| |||||||||||||||||| | |||||||||||           |||||||||||||||||||||||||||||||||||    
T  7169932 agttgggaacattgttggatggaaataaaattgtaatgttggatgaaatttaaaacattgctaaaaatatgttgtgttttaactttttaatttgatttta 7170031  T
Q  107 a 107  Q
    |    
T  7170032 a 7170032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 29048291 - 29048251
Alignment:
Q  73 atatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  29048291 atatgttgtgttttaactttttaatttgattttaatgttgg 29048251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 22414036 - 22413982
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| |||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  22414036 agttgggaacattgttggatgagaatgaaattgtaatgttggatgaaatttaaaa 22413982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 13092228 - 13092175
Alignment:
Q  19 gttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||| ||||| ||||||||||||||| |||||||||||| | ||||||||||||    
T  13092228 gttgggaacactgttggatgaaaatataattgtaatgttcgatgaaatttaaaa 13092175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 9686274 - 9686242
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgt 56  Q
    |||||||||||||||||||||||||||||||||    
T  9686274 gaacattgttggatgaaaataaaattgtaatgt 9686242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 8135433 - 8135398
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaa 216  Q
    |||||||| |||||||||||||||||||||||||||    
T  8135433 ggttcggatgacttttagcctcaaaaccgaaccaaa 8135398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 11417294 - 11417201
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||           ||||||||||||||| ||||||||||| ||||||||    
T  11417294 acattgttcgatgaaaataaaatcgtaatgttggatgaaatttaaaacattgctgaaaatatgttgtgttttatctttttaattttattttaat 11417201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 6399995 - 6399959
Alignment:
Q  68 taaaaatatgttgtgttttaactttttaatttgattt 104  Q
    ||||||||||||||||||||  |||||||||||||||    
T  6399995 taaaaatatgttgtgttttagatttttaatttgattt 6399959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 6400050 - 6400002
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||| ||||||||| || |||||||||| | ||||||||||||    
T  6400050 gaacattgttagatgaaaattaagttgtaatgttggatgaaatttaaaa 6400002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 25919102 - 25919208
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta-----------aaaatatgttgtgttttaactttttaatttgatttta 106  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||           |||||||||||||||||| |||||||||||||||| |    
T  25919102 agttgagaacattgttggatgaaaataaaattgaaatgttgggtgaaatttaaaacattagtgaaaatatgttgtgttttagctttttaatttgatttaa 25919201  T
Q  107 atattgg 113  Q
    || ||||    
T  25919202 atgttgg 25919208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 2566188 - 2566282
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||           ||||||||||||||| |||||| ||||||||||||    
T  2566188 gaacattgttggatgaaaataaaattgtaatgttagatgaaatttaaaacatggttgaaaatatgttgtgttttagcttttttatttgattttaa 2566282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 26758461 - 26758355
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta-----------aaaatatgttgtgttttaactttttaatttgatttta 106  Q
    ||||| ||||||||||||||||||||||||||||||| ||  ||||||||||           |||||||||||||||||| ||||||||||| ||||||    
T  26758461 agttgggaacattgttggatgaaaataaaattgtaattttgagtgaaatttaaaacattgctgaaaatatgttgtgttttagctttttaatttaatttta 26758362  T
Q  107 atattgg 113  Q
    || ||||    
T  26758361 atgttgg 26758355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 45629426 - 45629320
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta-----------aaaatatgttgtgttttaactttttaatttgatttta 106  Q
    |||||| |||||||||||||||||||||||||||||||||   |||||||||           |||||||||| ||||||| ||||||||||||||||||    
T  45629426 agttgaaaacattgttggatgaaaataaaattgtaatgttgtatgaaatttaaaatattgctgaaaatatgttatgttttacctttttaatttgatttta 45629327  T
Q  107 atattgg 113  Q
    || ||||    
T  45629326 atgttgg 45629320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 45915056 - 45915110
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||    
T  45915056 agttgagaacactgtttgatgaaaataaaattgtaatgttggatgaaatttaaaa 45915110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 55467491 - 55467545
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  55467491 agttgcgaacattgttggatgaaaataaaattgttatgttggatgaaatttaaaa 55467545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 27054248 - 27054211
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27054248 aaaatatgttgtgttttaactttttaatttgattttaa 27054211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 38680980 - 38680938
Alignment:
Q  71 aaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  38680980 aaatatgttgtgttttaactttttaacttaattttaatattgg 38680938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 45629287 - 45629245
Alignment:
Q  146 caatcaatctagtccaaaccgtattggtttggtttggttcgga 188  Q
    ||||||||||| ||||||||||||||||||| |||||||||||    
T  45629287 caatcaatctaatccaaaccgtattggtttgatttggttcgga 45629245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 54122555 - 54122452
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaatt--gtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgattt 104  Q
    ||||||||||||||||||||||||||||||||  ||||| || | ||||||||||||           ||||||| || |||||||||||||||||||||    
T  54122555 agttgagaacattgttggatgaaaataaaattttgtaatatttgatgaaatttaaaacattattaaaaatatgttatggtttaactttttaatttgattt 54122456  T
Q  105 taat 108  Q
    ||||    
T  54122455 taat 54122452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 55467728 - 55467764
Alignment:
Q  182 gttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    ||||||| |||||||||||||||||||||||||||||    
T  55467728 gttcggatgacttttagcctcaaaaccgaaccaaacc 55467764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 2832483 - 2832522
Alignment:
Q  180 tggttcggaagacttttagcctcaaaaccgaaccaaacca 219  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  2832483 tggttcggatgacttttagcctcaaaaccaaaccaaacca 2832522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 48167493 - 48167395
Alignment:
Q  25 aacattgttggatgaaaataaaattgtaatgttaggtgaaattta----------aaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    |||||||||| ||||| |||||||||||||||| | |||||||||          ||||||||||||||||||  |||||||||| |||||||| ||||    
T  48167493 aacattgttgaatgaacataaaattgtaatgttggatgaaatttataaattgttaaaaatatgttgtgttttagatttttaatttcattttaatgttgg 48167395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 55129972 - 55129933
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgtt 57  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  55129972 agttgcgaacattgttggataaaaataaaattgtaatgtt 55129933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 22257409 - 22257451
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaatattg 112  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||    
T  22257409 aaaatatgttgcgttttagctttttaatttgattttaacattg 22257451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 38651901 - 38651939
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  38651901 aaaaatatgttgtgttttaactttttaacctgattttaa 38651939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 17144814 - 17144851
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  17144814 ggtttggatgacttttagcctcaaaaccgaaccaaacc 17144851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 22256156 - 22256197
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatt 67  Q
    |||||| ||||||||||||||||||||||||| | |||||||    
T  22256156 acattgctggatgaaaataaaattgtaatgttggatgaaatt 22256197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 51194449 - 51194416
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgtt 57  Q
    |||||||||||||| |||||||||||||||||||    
T  51194449 gaacattgttggataaaaataaaattgtaatgtt 51194416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 22472922 - 22472970
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||| ||||||| ||||||||||||||| |  |||||||||||    
T  22472922 gaacattgttagatgaaagtaaaattgtaatgttggtcgaaatttaaaa 22472970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 26344898 - 26345004
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgatttta 106  Q
    ||||| ||||||| |||||||||||||||||||||||||| | ||||||||||||           ||||||||||||||||||||||||||||||||||    
T  26344898 agttgggaacattattggatgaaaataaaattgtaatgttggatgaaatttaaaacattgctgaaaatatgttgtgttttaactttttaatttgatttta 26344997  T
Q  107 atattgg 113  Q
    || ||||    
T  26344998 atgttgg 26345004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 34914364 - 34914258
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta-----------aaaatatgttgtgttttaactttttaatttgatttta 106  Q
    ||||| |||||||||||||||||||||||||||||| || || |||||||||           ||||||||||||||||||  |||||||||||||||||    
T  34914364 agttgggaacattgttggatgaaaataaaattgtaaggtcagatgaaatttaaaacattgctgaaaatatgttgtgttttaggtttttaatttgatttta 34914265  T
Q  107 atattgg 113  Q
    |||||||    
T  34914264 atattgg 34914258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 12973800 - 12973700
Alignment:
Q  19 gttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattt-----------aaaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||| ||||||||||| |||||||||||||||||||||| | ||||||||           |||||||||||| ||||||||||||||||||||||||||    
T  12973800 gttgggaacattgttgaatgaaaataaaattgtaatgttggatgaaatttaaaacattgctaaaaatatgttgcgttttaactttttaatttgattttaa 12973701  T
Q  108 t 108  Q
    |    
T  12973700 t 12973700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 3935690 - 3935592
Alignment:
Q  20 ttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaa-----------aatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||           |||||||||||||||||||| |||||||||||||||    
T  3935690 ttgataacattgttggatggaaataaaattgtaatgttggatgaaatttaaaacattgatgagaatatgttgtgttttaacttattaatttgattttaa 3935592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 36782222 - 36782325
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta----------aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    ||||| ||||||||||| || ||||||||||||||||||| | |||||||||          |||||||| | |||||||||||||||||||||||||||    
T  36782222 agttgggaacattgttgaataaaaataaaattgtaatgttggatgaaatttaaacattgctgaaaatatgctctgttttaactttttaatttgattttaa 36782321  T
Q  108 tatt 111  Q
    ||||    
T  36782322 tatt 36782325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 6694281 - 6694324
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  6694281 aaaatatgttgtgttttaactttttaatttgattttaatgttgg 6694324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 19051351 - 19051297
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  19051351 agttgcgagcattgttggataaaaataaaattgtaatgttagatgaaatttaaaa 19051297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 27350872 - 27350818
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||| || |||||||||||||||||||||||||||||| | ||||||||||||    
T  27350872 agttgaaaatattgttggatgaaaataaaattgtaatgttggatgaaatttaaaa 27350818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 40095261 - 40095315
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| ||||||||||||||||||||||||||||||||||   ||||||||||||    
T  40095261 agttgggaacattgttggatgaaaataaaattgtaatgttgaatgaaatttaaaa 40095315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 16063087 - 16062988
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta----------aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    ||||||||||||||||||||| |||||| ||||||||||| | |||||| ||          ||||||||| |||||||| |||||||||||||||||||    
T  16063087 agttgagaacattgttggatggaaataatattgtaatgttggatgaaatgtaaaacattgctaaaatatgtcgtgttttagctttttaatttgattttaa 16062988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 25865860 - 25865904
Alignment:
Q  28 attgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  25865860 attgttggatgaaaataaaattttaatgttagatgaaatttaaaa 25865904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 52380593 - 52380640
Alignment:
Q  27 cattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaaat 74  Q
    |||||||||||||| |||||||||||||||| | ||||||||||||||    
T  52380593 cattgttggatgaagataaaattgtaatgttggatgaaatttaaaaat 52380640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 6248313 - 6248259
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||| ||||||||||| ||||||||||||||||||||||| | | ||||||||||    
T  6248313 agttcagaacattgtttgatgaaaataaaattgtaatgttggattaaatttaaaa 6248259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 19051281 - 19051243
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaat 108  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  19051281 aaaatatgttgtgttttaactttttaacttgattttaat 19051243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 25507106 - 25507057
Alignment:
Q  23 agaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| ||||||||||||||||||||||||||||| | | ||||||||||    
T  25507106 agaactttgttggatgaaaataaaattgtaatgttggataaaatttaaaa 25507057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 35980472 - 35980509
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    |||||||| |||||||||||||||||||||||||||||    
T  35980472 ggttcggatgacttttagcctcaaaaccgaaccaaacc 35980509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 52829036 - 52828999
Alignment:
Q  35 gatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  52829036 gatgaaaataaaattgtaatgttagatgaaatttaaaa 52828999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 41751379 - 41751331
Alignment:
Q  19 gttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatt 67  Q
    ||||| ||||||||||||||||||| |||||||||||| || |||||||    
T  41751379 gttgaaaacattgttggatgaaaatgaaattgtaatgtcagatgaaatt 41751331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 10847440 - 10847483
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||    
T  10847440 aaaatatgttgtgttttaactttttaattttgttttaatgttgg 10847483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 11537021 - 11536974
Alignment:
Q  25 aacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||||||| |||| ||||||||||||||  ||||||||||||    
T  11537021 aacattgttggatgtaaatgaaattgtaatgttaaatgaaatttaaaa 11536974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 32910277 - 32910320
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||    
T  32910277 aaaatatgttgtgtttaaactttttaacttgattttaatgttgg 32910320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 39167124 - 39167171
Alignment:
Q  25 aacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||| || |||||||||||||||||||||| | ||||||||||||    
T  39167124 aacattgatgaatgaaaataaaattgtaatgttggatgaaatttaaaa 39167171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 15882062 - 15882096
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattt 104  Q
    |||||||||||||||||| ||||||||||||||||    
T  15882062 aaaatatgttgtgttttatctttttaatttgattt 15882096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 32937992 - 32938030
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  32937992 aaaatatgttgtgttttagctttttaacttgattttaat 32938030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 8268654 - 8268617
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    ||||| || |||||||||||||||||||||||||||||    
T  8268654 ggttcagatgacttttagcctcaaaaccgaaccaaacc 8268617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 8268814 - 8268777
Alignment:
Q  71 aaatatgttgtgttttaactttttaatttgattttaat 108  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  8268814 aaatatgttgtgttttagctttttaacttgattttaat 8268777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 9330612 - 9330568
Alignment:
Q  28 attgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||| ||||||||| ||||||||| | ||||||||||||    
T  9330612 attgttggataaaaataaaagtgtaatgtttgatgaaatttaaaa 9330568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 15881993 - 15882041
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||||||| ||||| |||||||||| || | ||||||||||||    
T  15881993 gaacattgttggataaaaatgaaattgtaatatttgatgaaatttaaaa 15882041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 17989036 - 17989008
Alignment:
Q  190 gacttttagcctcaaaaccgaaccaaacc 218  Q
    |||||||||||||||||||||||||||||    
T  17989036 gacttttagcctcaaaaccgaaccaaacc 17989008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 50310840 - 50310796
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgttaggtgaaattt 68  Q
    |||||||||||||| ||| ||||||||||||||||| | ||||||    
T  50310840 gaacattgttggataaaagtaaaattgtaatgttagatcaaattt 50310796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 50951886 - 50951930
Alignment:
Q  28 attgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||| | |||||||||||||||||||| || ||||||||||||    
T  50951886 attgtttggtgaaaataaaattgtaatgtcagttgaaatttaaaa 50951930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 5862518 - 5862572
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  5862518 agttgagaacattgttggatgaaaataaaattgtaatgttggatgaaatttaaaa 5862572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 41461309 - 41461209
Alignment:
Q  20 ttgagaacattgttggatgaaaataaaattgtaatgttaggtg-aaattta-----------aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||| ||||||||||||||||||||||||| | || |||||||           |||||||||||||||||| |||||||||||||||||||    
T  41461309 ttgagaacattggtggatgaaaataaaattgtaatgttggatgaaaatttaaaatattacggaaaatatgttgtgttttagctttttaatttgattttaa 41461210  T
Q  108 t 108  Q
    |    
T  41461209 t 41461209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 11678222 - 11678176
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||    
T  11678222 acattgttggatgaaaataaaattgtaatgctggatgaaatttaaaa 11678176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 11695700 - 11695654
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||    
T  11695700 acattgttggatgaaaataaaattgtaatgctggatgaaatttaaaa 11695654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 12041674 - 12041712
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacca 219  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  12041674 ggttcagatgacttttagcctcaaaaccgaaccaaacca 12041712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 24725710 - 24725747
Alignment:
Q  71 aaatatgttgtgttttaactttttaatttgattttaat 108  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  24725710 aaatatgttgtcttttaactttttaacttgattttaat 24725747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 36500714 - 36500751
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  36500714 ggttcggatgacttttagcctcaaaaccgaatcaaacc 36500751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 30759481 - 30759525
Alignment:
Q  28 attgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||| | ||||||||||||||||||||| | ||||||||||||    
T  30759481 attgtttggtgaaaataaaattgtaatgttggatgaaatttaaaa 30759525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 34087643 - 34087554
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||| ||||||||||| | |||||||| | |||||||||| | ||||||||||||   |||||||||||| |||||||||||||||||||    
T  34087643 agttcagaacattgttcggtgaaaatacagttgtaatgttggatgaaatttaaaatattgttgtgttttacctttttaatttgattttaa 34087554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 35240677 - 35240761
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaa--aatatgttgtgttttaactttttaatttgattttaat 108  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||  | | | |||||||||| ||||||||||| ||||||||    
T  35240677 acattgttggatgaaaataaaatcgtaatgtttgatgaaatttaaaacattgttttgtgttttatctttttaattttattttaat 35240761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 41455099 - 41455000
Alignment:
Q  25 aacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||           ||||||||||||||| |||||||||||||||||||| ||||    
T  41455099 aacattgttggatgaaaataaaattgaaatgttggatgaaatttaaaacattgatgaaaatatgttgtgttttagctttttaatttgattttaatgttgg 41455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 25495317 - 25495222
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||||||||||||||||||||||| ||||||| | ||| ||||||||           ||||||||||||||| ||||||||||||||||||||    
T  25495317 gaacattgttggatgaaaataaaattataatgtttgatgatatttaaaacattgttgaaaatatgttgtgttttacctttttaatttgattttaat 25495222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 691465 - 691509
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  691465 aaaaatatgttgtgttttaactttttaacttgattttaatgttgg 691509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 6595157 - 6595113
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||    
T  6595157 aaaaatatgttgtgttttaactttttaatctgattttaatgttgg 6595113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 36567948 - 36567842
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta-----------aaaatatgttgtgttttaactttttaatttgatttta 106  Q
    ||||| |||||||||||||||||||||||||||||||  |   |||||||||           |||||||||||||||||| ||||||||||||||||||    
T  36567948 agttgggaacattgttggatgaaaataaaattgtaataatgtatgaaatttagaaaattgctgaaaatatgttgtgttttagctttttaatttgatttta 36567849  T
Q  107 atattgg 113  Q
    || ||||    
T  36567848 atgttgg 36567842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 31075458 - 31075511
Alignment:
Q  19 gttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||| |||||||||| |||||||||||||||||||| || | ||||||||||||    
T  31075458 gttgggaacattgttagatgaaaataaaattgtaatattggatgaaatttaaaa 31075511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 33792842 - 33792805
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||||||||| |||||||||||||||||||    
T  33792842 aaaatatgttgtgttttacctttttaatttgattttaa 33792805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 34881172 - 34881225
Alignment:
Q  19 gttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||| |||||| ||||||||||||||||||| ||||||| | ||||||||||||    
T  34881172 gttgggaacatcgttggatgaaaataaaattttaatgttggatgaaatttaaaa 34881225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 2589142 - 2589103
Alignment:
Q  74 tatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  2589142 tatgttgtgttttaactttttaacttgattttaaaattgg 2589103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 6367701 - 6367748
Alignment:
Q  25 aacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||||||||| |||||||||||||||||| |  |||||||||    
T  6367701 aacattgttggatgaacataaaattgtaatgttagatcgaatttaaaa 6367748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 10090463 - 10090424
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgtt 57  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  10090463 agttgggaacattattggatgaaaataaaattgtaatgtt 10090424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 12264107 - 12264060
Alignment:
Q  21 tgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattt 68  Q
    ||||||||||||||||||||||| |||||||||| || | ||||||||    
T  12264107 tgagaacattgttggatgaaaatgaaattgtaattttggatgaaattt 12264060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 6894248 - 6894302
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| |||||||| | ||| ||||||||||||||||||| | ||||||||||||    
T  6894248 agttgcgaacattggtagataaaaataaaattgtaatgttggatgaaatttaaaa 6894302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 17131934 - 17131980
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||    
T  17131934 acattgtttgatgaaaataaaatcgtaatgttggatgaaatttaaaa 17131980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 32244230 - 32244276
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||    
T  32244230 acattgtttgatgaaaataaaatcgtaatgttggatgaaatttaaaa 32244276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 40884492 - 40884450
Alignment:
Q  71 aaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||    
T  40884492 aaatatgttatgttttagctttttaatttgattttaatgttgg 40884450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 10090303 - 10090266
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    ||||| || |||||||||||||||||||||||||||||    
T  10090303 ggttctgatgacttttagcctcaaaaccgaaccaaacc 10090266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 27572130 - 27572167
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  27572130 ggttcggatgacttttaacctcaaaaccgaaccaaacc 27572167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 25495073 - 25495045
Alignment:
Q  190 gacttttagcctcaaaaccgaaccaaacc 218  Q
    |||||||||||||||||||||||||||||    
T  25495073 gacttttagcctcaaaaccgaaccaaacc 25495045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 22298765 - 22298711
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  22298765 agttgggaacattgttggatgaaaataaaattgtaatgttggatgaaatttaaaa 22298711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 11834320 - 11834414
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||||||||||||||| ||||||||| | | ||||||||||           ||||||||||||||| |||||||||||||||||||    
T  11834320 gaacattgttggatgaaaataaaactgtaatgttggataaaatttaaaacattgttgaaaatatgttgtgttttagctttttaatttgattttaa 11834414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 31287678 - 31287721
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  31287678 aaaatatgttgtggtttaactttttaatttgattttaatgttgg 31287721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 26215016 - 26215058
Alignment:
Q  71 aaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  26215016 aaatatgttgtgttttacctttttaatttgattttaatgttgg 26215058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 6880009 - 6880046
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  6880009 aaaatatgttgtgttttaactttttaacttgattttaa 6880046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 20334811 - 20334762
Alignment:
Q  23 agaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||||||||||| ||||||||||||||||||| | | ||||||||||    
T  20334811 agaacattgttggataaaaataaaattgtaatgttggatcaaatttaaaa 20334762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 34751215 - 34751171
Alignment:
Q  28 attgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||||||||||||||||||||||||||   ||||||||||||    
T  34751215 attgttggatgaaaataaaattgtaatgttgtatgaaatttaaaa 34751171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 1739972 - 1739934
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  1739972 aaaatacgttgtgttttaactttttaattcgattttaat 1739934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 7697458 - 7697420
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  7697458 aaaatatgttgtgttttatctttataatttgattttaat 7697420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 8568396 - 8568449
Alignment:
Q  19 gttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaaa 73  Q
    |||| ||||||||||| ||| |||||||||||||||||| | |||||||||||||    
T  8568396 gttgggaacattgttg-atggaaataaaattgtaatgttggatgaaatttaaaaa 8568449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 35819930 - 35819976
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||    
T  35819930 acattgtttgatgaaaataaaatcgtaatgttggatgaaatttaaaa 35819976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 2308015 - 2308052
Alignment:
Q  71 aaatatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  2308015 aaatatgttgtgttataactttttaattcgattttaat 2308052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 8568639 - 8568676
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8568639 ggttcggatgacttttaacctcaaaaccgaaccaaacc 8568676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 25007499 - 25007462
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  25007499 aaaatatgttttgttttaactttttactttgattttaa 25007462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 43908895 - 43908866
Alignment:
Q  28 attgttggatgaaaataaaattgtaatgtt 57  Q
    ||||||||||||||||||||||||||||||    
T  43908895 attgttggatgaaaataaaattgtaatgtt 43908866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 23411151 - 23411191
Alignment:
Q  28 attgttggatgaaaataaaattgtaatgttaggtgaaattt 68  Q
    |||||| ||||||||| ||||||||||||||| ||||||||    
T  23411151 attgttagatgaaaatgaaattgtaatgttagatgaaattt 23411191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 27100925 - 27100969
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||| |||||||||  ||||||||||||||||||| ||||    
T  27100925 aaaaatatgctgtgttttagatttttaatttgattttaatgttgg 27100969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 27177378 - 27177334
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||| |||||||||  ||||||||||||||||||| ||||    
T  27177378 aaaaatatgctgtgttttagatttttaatttgattttaatgttgg 27177334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 23625755 - 23625849
Alignment:
Q  24 gaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||||||||||||||||| ||||||| | | ||||||||||           |||||||||||||||||||||||||||||||||||    
T  23625755 gaacattgttggatgaaaataaaattataatgttggattaaatttaaaacattgttgaaaatatgttgtgttttaactttttaatttgattttaa 23625849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 29232974 - 29232927
Alignment:
Q  25 aacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  29232974 aacattgttggatgaaaataaaattgtaatgttggatgaaatttaaaa 29232927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 1564915 - 1564969
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| ||||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  1564915 agttgggaacattgttgaatggaaataaaattgtaatgttagatgaaatttaaaa 1564969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 27743433 - 27743383
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattt 68  Q
    ||||| |||||||||||| ||||||||||||||||||||| | ||||||||    
T  27743433 agttgggaacattgttggctgaaaataaaattgtaatgttggatgaaattt 27743383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 35014506 - 35014452
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| ||||||| |||||| ||||||||||||||||||| | ||||||||||||    
T  35014506 agttgcgaacattattggataaaaataaaattgtaatgttcgatgaaatttaaaa 35014452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 17845126 - 17845082
Alignment:
Q  28 attgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||    
T  17845126 attgtttgatgaaaataaaattgtaatgttggatgaaatttaaaa 17845082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 23120159 - 23120203
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||    
T  23120159 aaaaatatgttgtgttttaactttttaacctgattttaatgttgg 23120203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 23449895 - 23449935
Alignment:
Q  67 ttaaaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  23449895 ttaaaaatatgttctgtttttactttttaatttgattttaa 23449935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 45226606 - 45226554
Alignment:
Q  20 ttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||| |||||||||| |||||||| ||||||||||||| | ||||||||||||    
T  45226606 ttgaaaacattgttgtatgaaaatgaaattgtaatgtttgatgaaatttaaaa 45226554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 45983554 - 45983510
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||    
T  45983554 aaaaatatgttgtgttttaactttttaacctgattttaatgttgg 45983510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 48653707 - 48653739
Alignment:
Q  25 aacattgttggatgaaaataaaattgtaatgtt 57  Q
    |||||||||||||||||||||||||||||||||    
T  48653707 aacattgttggatgaaaataaaattgtaatgtt 48653739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 8484843 - 8484804
Alignment:
Q  70 aaaatatgtt-gtgttttaactttttaatttgattttaat 108  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  8484843 aaaatatgtttgtgttttaactttttaatttgattttaat 8484804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 21069277 - 21069234
Alignment:
Q  30 tgttggatgaaaataaaattgtaatgttaggtgaaatttaaaaa 73  Q
    |||||||||||||||||||||||||||| | | |||||||||||    
T  21069277 tgttggatgaaaataaaattgtaatgttggattaaatttaaaaa 21069234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 40494656 - 40494613
Alignment:
Q  29 ttgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||    
T  40494656 ttgttggatgaaaataaaattgtgatgttggatgaaatttaaaa 40494613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 45464366 - 45464327
Alignment:
Q  68 taaaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  45464366 taaaaatatgttatgttttagctttttaatttgattttaa 45464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 45577895 - 45577942
Alignment:
Q  21 tgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattt 68  Q
    ||||||||||||||| | ||||| ||||||||||||| ||||||||||    
T  45577895 tgagaacattgttggttaaaaattaaattgtaatgttgggtgaaattt 45577942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 49641015 - 49640972
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||    
T  49641015 aaaatatgttgtgttttaactctttaacttgattttaatgttgg 49640972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 19753360 - 19753406
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||    
T  19753360 acattgtttgatgaaaataaaatcgtaatgttggatgaaatttaaaa 19753406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 19786446 - 19786400
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||    
T  19786446 acattgtttgatgaaaataaaatcgtaatgttggatgaaatttaaaa 19786400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 20986631 - 20986577
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||| |||||| |||||||| |||||||||| ||||||| | ||||||||||||    
T  20986631 agttgggaacatcgttggatggaaataaaattataatgttggatgaaatttaaaa 20986577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 21069225 - 21069187
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaat 108  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  21069225 aaaatatgtagtgttttagctttttaatttgattttaat 21069187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 42198957 - 42198919
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  42198957 aaaatatgttgtgttttaactttttaacatgattttaat 42198919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 4642419 - 4642382
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  4642419 ggttcggataacttttagcctcaaaaccgaaccaaacc 4642382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 8484904 - 8484867
Alignment:
Q  20 ttgagaacattgttggatgaaaataaaattgtaatgtt 57  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  8484904 ttgagaatattgttggatggaaataaaattgtaatgtt 8484867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 36106505 - 36106542
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacc 218  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  36106505 ggttcggatgacttttaacctcaaaaccgaaccaaacc 36106542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 48293490 - 48293526
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaac 217  Q
    |||||||| |||||||| |||||||||||||||||||    
T  48293490 ggttcggatgacttttaacctcaaaaccgaaccaaac 48293526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 13325533 - 13325479
Alignment:
Q  18 agttgagaacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||||||||||| |||| |||||||||||||||||| | ||||||||||||    
T  13325533 agttgagaacattgttagatggaaataaaattgtaatgttggatgaaatttaaaa 13325479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 4785412 - 4785367
Alignment:
Q  68 taaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  4785412 taaaaatatattgtgttttaactttttaatttgattttaatgttgg 4785367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 37162501 - 37162599
Alignment:
Q  21 tgagaacattgttggatgaaaataaaattgtaatgttaggtgaaattta-----------aaaatatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||||||||||||||| |||||||||| |||||||  ||||||||||           ||||||| ||||||||||||||||||||||| |||||||    
T  37162501 tgagaacattgttggatggaaataaaattataatgtttagtgaaatttaaaacattgctgaaaatatattgtgttttaactttttaatttggttttaat 37162599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 9012692 - 9012739
Alignment:
Q  25 aacattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  9012692 aacattgttggataaaaataaaattgtaatgttcgatgaaatttaaaa 9012739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 18755239 - 18755282
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||    
T  18755239 aaaatatgttgtgttttaactttttaatttggttttaatgttgg 18755282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 12193375 - 12193412
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||||||||| |||||||||||||||||||    
T  12193375 aaaatatgttgtgttttagctttttaatttgattttaa 12193412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 12437803 - 12437840
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||||||||| |||||||||||||||||||    
T  12437803 aaaatatgttgtgttttagctttttaatttgattttaa 12437840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 33566178 - 33566087
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa-----------atatgttgtgttttaactttttaatttgatttta 106  Q
    |||| ||||||||||||||||||| ||||||| | ||||||||||||           ||||||||||||||| ||||||||||||||||||    
T  33566178 acatagttggatgaaaataaaattataatgttggatgaaatttaaaacattactgaaaatatgttgtgttttagctttttaatttgatttta 33566087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 7428293 - 7428328
Alignment:
Q  37 tgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7428293 tgaaaataaaattgtaatgttagatgaaatttaaaa 7428328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 11219122 - 11219084
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  11219122 aaaaatatgttgcgttttagctttttaatttgattttaa 11219084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 22811093 - 22811131
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  22811093 aaaaatatgttgtgttttagctttttaatttgcttttaa 22811131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 36340604 - 36340650
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||    
T  36340604 acattgtttgatgaaaataaaatcgtaatgttggatgaaatttaaaa 36340650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 38926339 - 38926377
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaat 108  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  38926339 aaaatatgttgtgttttacctttttaacttgattttaat 38926377  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 30254029 - 30254066
Alignment:
Q  70 aaaatatgttgtgttttaactttttaatttgattttaa 107  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  30254029 aaaataggttgtgttttaaccttttaatttgattttaa 30254066  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 31497510 - 31497554
Alignment:
Q  69 aaaaatatgttgtgttttaactttttaatttgattttaatattgg 113  Q
    ||||||||||||||||||||||| ||||  |||||||||| ||||    
T  31497510 aaaaatatgttgtgttttaacttattaacctgattttaatgttgg 31497554  T

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Target: scaffold0688 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 1156 - 1118
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacca 219  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  1156 ggttcggatgacttttagcctcaaaaccgaaccaaacca 1118  T

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Target: scaffold0688; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 7725 - 7687
Alignment:
Q  181 ggttcggaagacttttagcctcaaaaccgaaccaaacca 219  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7725 ggttcggatgacttttagcctcaaaaccgaaccaaacca 7687  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 62638 - 62592
Alignment:
Q  26 acattgttggatgaaaataaaattgtaatgttaggtgaaatttaaaa 72  Q
    |||||||| |||||||||||||| |||||||| | ||||||||||||    
T  62638 acattgtttgatgaaaataaaatcgtaatgttggatgaaatttaaaa 62592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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