View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_55 (Length: 240)
Name: NF3804_high_55
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_55 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 7459560 - 7459339
Alignment:
| Q |
5 |
tagttttcaattcgaaatcggaatttggtaccaacaaagaatttggtccttaaagttagcttaaaggataagcgtactcaaacaatatttgtacgtccta |
104 |
Q |
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| T |
7459560 |
tagttttcaattccaacttggaatttggtaccaacaaagaatttggtccttaaagttagcttaaaggataagagtactcaaacaatatttgtacgtccaa |
7459461 |
T |
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| Q |
105 |
caacttgaaaatttgagcaatgtggactctaaacaaactttaatacccactttacacctaatgtggatcttagtccaattttcacaatgcagtattaatc |
204 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7459460 |
caacttaaaaacttgagcaatgtggactctaaacaaactttaatacccactttacacctaatgtggatcttagtccaattttcacaatgcagtattaatc |
7459361 |
T |
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| Q |
205 |
ctactctaaaaccatgttaaat |
226 |
Q |
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|||||||||||||||||||||| |
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| T |
7459360 |
ctactctaaaaccatgttaaat |
7459339 |
T |
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