View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_high_58 (Length: 237)
Name: NF3804_high_58
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32822633 - 32822857
Alignment:
| Q |
1 |
aatattatttcaactatgttcttgcttgtatcttctggacccagctcagaaactaatatatgcataaggaaaaaataaaatgaaagataattaaaca--- |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32822633 |
aatattatttcaactatgttcttgcttgtatcttctggacccagctcagaaactaatatatgcataaggaaaaaataaaatgaaagataatcaaacattt |
32822732 |
T |
|
| Q |
98 |
---catattcaattatggtacattggtattttttgaactaaagacaaacataatgtaacacaagcgataaccggtccatttatgtatcaaagaaatcaat |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
32822733 |
aagtatattcaattatggtacattggtatttttcgaactaaagacaaacataatgtaacacaagcaataaccagtccatttatgtatcaaagaaatcagt |
32822832 |
T |
|
| Q |
195 |
--tatgtcctgactcttagtcgaga |
217 |
Q |
| |
|
|||||||||||||| | |||||| |
|
|
| T |
32822833 |
tatatgtcctgactctcaatcgaga |
32822857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University