View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_59 (Length: 237)
Name: NF3804_high_59
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36795617 - 36795397
Alignment:
| Q |
1 |
tcctttatttggggatattgtagtactcaaggcatatgtggtaggtgctttgcctcttgctactaagaaaaaacctcaaagcatttgtgcacgtgttcgc |
100 |
Q |
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| T |
36795617 |
tcctttatttggggatattgtagtactcaaggcatatgtggtaggtgctttgcctcttgctactaagaaaaaacctcaaagcatttgtgcacgtgttcgc |
36795518 |
T |
|
| Q |
101 |
agaaaaactgaaaaacttgggtttccacttgcaaggagagattcaacttgtgaaagcaacactagtagtctagtacacaactacacacttattttctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36795517 |
agaaaaactgaaaaacttgggtttccacttgcaaggagagattcaacttgtgaaagcaacactagtagtctagtacactactacacacttattttctcat |
36795418 |
T |
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| Q |
201 |
ggccacatgaacggtgtctag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36795417 |
ggccacatgaacggtgtctag |
36795397 |
T |
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