View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_high_60 (Length: 236)
Name: NF3804_high_60
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_60 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3824716 - 3824497
Alignment:
| Q |
1 |
atttccttacatactttctttacttttcttaaccaaacaaaatgtaatagattggaatgagttagtccgtaacctaaatctatattaactttagtgaatt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3824716 |
atttccttacatattttctttacttttcttaaccaaacaaaatgtaatagattggaatgagttagtccgtaacctaaatctatattaactttagtgaatt |
3824617 |
T |
|
| Q |
101 |
tctgtactgatgtagaatctcacacttttcgtgtactataataatgcacttttattggtgtagtagtttagattctttcgaacgtgtcattggttttagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3824616 |
tctgtactgatgtagaatctcacacttttcgtgtactataataatgcacttttattggtgtagtagtttagattctttcgaacgtgtcattggttttagc |
3824517 |
T |
|
| Q |
201 |
cttagatgttgtcctcatta |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3824516 |
cttagatgttgtcctcatta |
3824497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University