View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_high_66 (Length: 225)

Name: NF3804_high_66
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_high_66
NF3804_high_66
[»] chr6 (5 HSPs)
chr6 (7-101)||(19649850-19649944)
chr6 (21-114)||(19658864-19658957)
chr6 (27-75)||(9987351-9987399)
chr6 (123-151)||(19376217-19376245)
chr6 (123-151)||(21604122-21604150)
[»] chr7 (6 HSPs)
chr7 (25-114)||(21145893-21145982)
chr7 (54-114)||(29190296-29190356)
chr7 (30-93)||(29190827-29190890)
chr7 (21-107)||(7467335-7467421)
chr7 (123-155)||(5031924-5031956)
chr7 (123-151)||(48848167-48848195)
[»] chr5 (3 HSPs)
chr5 (21-107)||(15209467-15209553)
chr5 (109-154)||(35936526-35936571)
chr5 (123-155)||(37631600-37631632)
[»] chr2 (5 HSPs)
chr2 (21-101)||(44255282-44255362)
chr2 (123-155)||(34181828-34181860)
chr2 (30-109)||(9758125-9758204)
chr2 (21-66)||(20116503-20116548)
chr2 (123-155)||(23834489-23834521)
[»] chr3 (5 HSPs)
chr3 (21-111)||(8634991-8635081)
chr3 (123-155)||(44512281-44512313)
chr3 (19-51)||(5685682-5685714)
chr3 (123-151)||(19756864-19756892)
chr3 (123-155)||(41301301-41301333)
[»] chr4 (5 HSPs)
chr4 (21-94)||(8025918-8025991)
chr4 (115-152)||(42861375-42861412)
chr4 (123-151)||(30966614-30966642)
chr4 (123-155)||(34318659-34318691)
chr4 (123-151)||(36680210-36680238)
[»] chr8 (1 HSPs)
chr8 (123-151)||(29724111-29724139)
[»] chr1 (2 HSPs)
chr1 (123-155)||(24004087-24004119)
chr1 (123-155)||(36454283-36454315)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 19649850 - 19649944
Alignment:
Q  7 ttaccttactgtaccactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctacc 101  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  19649850 ttaccttaccgtaccactacaagaaaatctaagatttgctactatgactgtgctaggaaatttaattgtagagaatatcaacataattagctacc 19649944  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 19658957 - 19658864
Alignment:
Q  21 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctaccgtttgactaatta 114  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  19658957 cactacaaaaaaatctaagttttgctaccatgagtgtgctaggaaatttaatggtagcgaatatcaacataattagctaccatttgattaatta 19658864  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 9987351 - 9987399
Alignment:
Q  27 aagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggt 75  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||||    
T  9987351 aagaaaatctaagatttgctatcataagtgtgctaggaaatttaatggt 9987399  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 19376245 - 19376217
Alignment:
Q  123 gttaatggtgctttaccccctataatata 151  Q
    |||||||||||||||||||||||||||||    
T  19376245 gttaatggtgctttaccccctataatata 19376217  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 21604122 - 21604150
Alignment:
Q  123 gttaatggtgctttaccccctataatata 151  Q
    |||||||||||||||||||||||||||||    
T  21604122 gttaatggtgctttaccccctataatata 21604150  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 21145982 - 21145893
Alignment:
Q  25 acaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctaccgtttgactaatta 114  Q
    |||| ||||| |||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||| | ||||||||||||    
T  21145982 acaaaaaaatttaagattttctaccatgagtgtgctagaaaatttaatgggagtgaatatcaacataattagctatcatttgactaatta 21145893  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 29190296 - 29190356
Alignment:
Q  54 gtgtgctaggaaatttaatggtagggaatatcaacataattagctaccgtttgactaatta 114  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  29190296 gtgtgctaggaaatttaatggtagtgaatatcaacataattaactaccatttgactaatta 29190356  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 29190890 - 29190827
Alignment:
Q  30 aaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataat 93  Q
    |||||||||||||| ||||||||| |||| |||||||||||||| ||| |||||||||||||||    
T  29190890 aaaatctaagatttgctaccatgaatgtggtaggaaatttaatgatagtgaatatcaacataat 29190827  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 7467335 - 7467421
Alignment:
Q  21 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctaccgtttga 107  Q
    |||||||||||||| | |||||| ||||||||| ||||||||||||| |||||||||  |||||||  ||||||| ||||| |||||    
T  7467335 cactacaagaaaatatcagatttgctaccatgattgtgctaggaaatgtaatggtagtaaatatcattataattaactaccatttga 7467421  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 5031924 - 5031956
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    ||||||||||||||||||||| |||||||||||    
T  5031924 gttaatggtgctttaccccctgtaatatatgtc 5031956  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 48848195 - 48848167
Alignment:
Q  123 gttaatggtgctttaccccctataatata 151  Q
    |||||||||||||||||||||||||||||    
T  48848195 gttaatggtgctttaccccctataatata 48848167  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 15209467 - 15209553
Alignment:
Q  21 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctaccgtttga 107  Q
    |||||||||| |||||||||||| ||||||| | ||||||||||||| || |||||| |||||| || | ||||||||||| |||||    
T  15209467 cactacaagagaatctaagatttgctaccataactgtgctaggaaatatattggtagtgaatattaaaacaattagctaccatttga 15209553  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 35936526 - 35936571
Alignment:
Q  109 taattactttgagtgttaatggtgctttaccccctataatatatgt 154  Q
    |||||| ||| || ||||||||||||||||||||| ||||||||||    
T  35936526 taattaatttaagggttaatggtgctttaccccctgtaatatatgt 35936571  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 37631600 - 37631632
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    ||||||||||||||||||||| |||||||||||    
T  37631600 gttaatggtgctttaccccctgtaatatatgtc 37631632  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 44255282 - 44255362
Alignment:
Q  21 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctacc 101  Q
    ||||||||||||||||||||||| ||||||| | |||||||  ||||  ||||||||  |||||||| ||||||| |||||    
T  44255282 cactacaagaaaatctaagatttgctaccataactgtgctacaaaataaaatggtagtaaatatcaaaataattaactacc 44255362  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 34181860 - 34181828
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    |||||||||||||||||||||||||||||||||    
T  34181860 gttaatggtgctttaccccctataatatatgtc 34181828  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 9758125 - 9758204
Alignment:
Q  30 aaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctaccgtttgact 109  Q
    ||||| ||||||||  |||||||| | |||||||| || |||||||||   ||||||| ||||||||||||| |||||||    
T  9758125 aaaatataagatttggtaccatgactctgctaggagatataatggtagtagatatcaaaataattagctaccatttgact 9758204  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 20116548 - 20116503
Alignment:
Q  21 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaa 66  Q
    |||||||||||||| ||||||||  |||||||| ||||||||||||    
T  20116548 cactacaagaaaatataagatttggtaccatgattgtgctaggaaa 20116503  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 23834521 - 23834489
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    ||||||||||||||||||||| |||||||||||    
T  23834521 gttaatggtgctttaccccctgtaatatatgtc 23834489  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 8634991 - 8635081
Alignment:
Q  21 cactacaagaaaatctaagatttactaccatgagtgtgc-taggaaatttaatggtagggaatatcaacataattagctaccgtttgactaa 111  Q
    ||||||| ||||||||||||||| ||| ||||| |||||  ||||||| ||||||||| ||||||||| || ||||||| || |||||||||    
T  8634991 cactacaggaaaatctaagatttgctatcatgactgtgcaaaggaaatgtaatggtagtgaatatcaagat-attagctgccatttgactaa 8635081  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 44512281 - 44512313
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    |||||||||||||||||||||||||||||||||    
T  44512281 gttaatggtgctttaccccctataatatatgtc 44512313  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 5685682 - 5685714
Alignment:
Q  19 accactacaagaaaatctaagatttactaccat 51  Q
    ||||||||||||||||||||||||| |||||||    
T  5685682 accactacaagaaaatctaagattttctaccat 5685714  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 19756864 - 19756892
Alignment:
Q  123 gttaatggtgctttaccccctataatata 151  Q
    |||||||||||||||||||||||||||||    
T  19756864 gttaatggtgctttaccccctataatata 19756892  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 41301333 - 41301301
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    ||||||||||||||||||||| |||||||||||    
T  41301333 gttaatggtgctttaccccctgtaatatatgtc 41301301  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 8025991 - 8025918
Alignment:
Q  21 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataatt 94  Q
    |||||||||||||||| |||||| ||||||| | |||||||  |||| |||||||||  ||||| || ||||||    
T  8025991 cactacaagaaaatcttagatttgctaccataattgtgctacaaaatgtaatggtagtaaatatgaatataatt 8025918  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 42861375 - 42861412
Alignment:
Q  115 ctttgagtgttaatggtgctttaccccctataatatat 152  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  42861375 ctttgagggttaatggtgctttaccccctgtaatatat 42861412  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 30966614 - 30966642
Alignment:
Q  123 gttaatggtgctttaccccctataatata 151  Q
    |||||||||||||||||||||||||||||    
T  30966614 gttaatggtgctttaccccctataatata 30966642  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 34318691 - 34318659
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    ||||||||||||||||||||| |||||||||||    
T  34318691 gttaatggtgctttaccccctgtaatatatgtc 34318659  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 36680238 - 36680210
Alignment:
Q  123 gttaatggtgctttaccccctataatata 151  Q
    |||||||||||||||||||||||||||||    
T  36680238 gttaatggtgctttaccccctataatata 36680210  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 29724139 - 29724111
Alignment:
Q  123 gttaatggtgctttaccccctataatata 151  Q
    |||||||||||||||||||||||||||||    
T  29724139 gttaatggtgctttaccccctataatata 29724111  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 24004087 - 24004119
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    ||||||||||||||||||||| |||||||||||    
T  24004087 gttaatggtgctttaccccctgtaatatatgtc 24004119  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 36454283 - 36454315
Alignment:
Q  123 gttaatggtgctttaccccctataatatatgtc 155  Q
    ||||||||||||||||||||| |||||||||||    
T  36454283 gttaatggtgctttaccccctttaatatatgtc 36454315  T

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