View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_high_7 (Length: 562)
Name: NF3804_high_7
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 36 - 355
Target Start/End: Complemental strand, 49678691 - 49678362
Alignment:
| Q |
36 |
cattaaaaagaatctaccctcaataagatcaatgactaaaactgctctatctcaaaagtaaattaaagttcaagcttgaattttttccaatttaggggtc |
135 |
Q |
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| T |
49678691 |
cattaaaaagaatctaccctcaataagatcaataactaaaactgctctatttcaaaagtaaattaaagttcaagcttgaattttttccaatttaggggtc |
49678592 |
T |
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| Q |
136 |
tgattgataccggaagggtaattatatagaggttcattgttatttggtttgctaacatttgaataatatggaaaggctgtaacaaaacaacatttaggaa |
235 |
Q |
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| T |
49678591 |
tgattgataccggaagggtaattatatagaggttcattgttatttggtttgctaacatttgaataatatggaaaggctgtaacgaaacaacatttaggaa |
49678492 |
T |
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| Q |
236 |
cacaatggatctgcagaagacattcacctgctgtcttaaaagtggtcatata----------tggttttaattatcctatcaatcaatggattttatacc |
325 |
Q |
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| T |
49678491 |
cacaatggatctgcagaagacattcacctgctgtcttaaaagtggtcatatagcaaggtgcttggttttaactatcctatcaatcaatggattttatacc |
49678392 |
T |
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| Q |
326 |
catagagttgattttatacccatagagttg |
355 |
Q |
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| T |
49678391 |
catagagttggttttatacccatagagttg |
49678362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 357 - 547
Target Start/End: Complemental strand, 49678280 - 49678091
Alignment:
| Q |
357 |
ttttaatgaattcaagctgtggagtagctgtgggtattaggtgcttcatatctattttatgttaatctgcttattttagttttgcatctctgttgatcta |
456 |
Q |
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| T |
49678280 |
ttttaatgaattcaagct-tggagtagctgtgggtattaggtgcttcatatctattttatgttaatctgcttattttagttttgcatctctgttgatctg |
49678182 |
T |
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| Q |
457 |
tattttctgatagcatacagtttattggcagaggggttattgttgttaagtttcaggacgtaggaatttgaaattgtaatcgggttggttg |
547 |
Q |
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| T |
49678181 |
tattttctgatagcatacagtttattagtagaggggttattgttgttaagtttcaggttgtaggaatttgaaattgtaatggggttggttg |
49678091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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