View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_high_70 (Length: 208)
Name: NF3804_high_70
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_high_70 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 31055861 - 31055691
Alignment:
| Q |
20 |
agagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31055861 |
agagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatg |
31055762 |
T |
|
| Q |
120 |
tacctgaaaaacagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttat |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31055761 |
tacctgaaaaacagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttat |
31055691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 34742763 - 34742869
Alignment:
| Q |
22 |
agaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatgta |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||| |||||| || | || ||| ||||||||| ||| || |||||||| |
|
|
| T |
34742763 |
agaacaagaattgctgtaacttcacattttcttatcagcttttgaggttgagttctcatcccaataagtctatggcctccaattcttggccttctatgta |
34742862 |
T |
|
| Q |
122 |
cctgaaa |
128 |
Q |
| |
|
|||||| |
|
|
| T |
34742863 |
tctgaaa |
34742869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University